Epinephelus fuscoguttatus (brown-marbled grouper): 125888639
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Entry
125888639 CDS
T08419
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03022
Basal transcription factors
efo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125888639 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
125888639 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125888639 (ercc2)
03036 Chromosome and associated proteins [BR:
efo03036
]
125888639 (ercc2)
03400 DNA repair and recombination proteins [BR:
efo03400
]
125888639 (ercc2)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125888639 (ercc2)
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125888639 (ercc2)
Chromosome and associated proteins [BR:
efo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
125888639 (ercc2)
DNA repair and recombination proteins [BR:
efo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125888639 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125888639
NCBI-ProteinID:
XP_049432085
LinkDB
All DBs
Position
LG5:complement(35896399..35916194)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGESNNFLALALSSRKNLCIHPE
VSALRFGKEVDGKCHSLTASYIRAQRHSDPSVPACRFYEEFDSVGRQVPLPAGIYNLDDL
KDYGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVDTLQNTIHKIKETDAAKLKQEYRRLVEGLKEANVARE
TDVYLANPVLPDEILQEAVPGTIRTAEHFVGFLKRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVVITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLESEEMLQKIAQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgagggtctgttggtgtattttccatatgactacatatatcctgag
cagtactcctacatgctggagctgaagaggactctggatgccaagggtcatggagtcctg
gagatgccgtcaggaacagggaagaccatctctctgctgtctctcattgttgcctaccaa
aaggcctttcctttggaagtgaccaagctaatatactgctccagaacagttccagagatc
gagaaggtcgtggaggagctgaggaagttgatggagttttattccaaggaaactggagag
agcaacaatttcctggctctggccctttcctccagaaaaaacctctgcatccaccctgag
gtgagtgctctgcgctttggtaaggaggttgatgggaagtgccacagtctgacagcatcg
tacattcgcgcacaacgccacagtgaccccagcgtgcctgcatgtcgcttctatgaggag
tttgattcagttggcagacaggtgcctcttcctgctggcatctacaaccttgacgacctg
aaggactatggcaggagaaaaggctggtgtccctactatctggcgcgctactcaatcctg
catgctaacattgtggtgtacagttaccactacctgctggatcctaagatagctgacttg
gtgtccaaagagctggccaagaagtctgtagtggtatttgacgaagctcataatatagac
aatgtgtgcattgactccatgagcgtgaacatcaccagacgaacacttgaccgctgccag
accaatgtggacactcttcagaacaccatacacaagataaaggagacagatgctgccaaa
ctgaagcaggagtacaggcgactggtggaggggctgaaggaagccaatgttgccagggaa
acagacgtctacctcgcaaatcctgtgttaccagatgaaattcttcaagaggcagtccct
ggtactattcgcacagcagagcactttgttggtttcttgaaacgtttcctggagtatctg
aagtcccgtctgagggtccaacatgtcgtacaggagagtgccccgcagttcctcaaagac
atcttcgacaaagtctgcatcgaccgcaaacctctcaggttttgtgcagagcggttacag
tcgttgctacgaactctggagattgccgacattgctgacttctcagctgttactcttatc
tctaactttgctaccctggtcagcacctacagccaaggtttcactataatcattgagccc
tttgaagacagaacaccaaccatcgccaaccctgtgctgcacttcagctgtatggaccct
tcaattgccatcaaacctgtttttcaaagatttcagtcagtcgtcatcacctcagggact
ctctctccactagacatctatccccgaatcctcgacttccgcccagttaccatggcatcc
ttcaccatgaccctggcacggacctgcctctgtccgctgattgttggcaggggaaatgat
caggtggccctgagctcaaagtttgagaccagagaagattttgctgtgattcgtaattat
ggcaacctacttctagagatgtctgcaatcgttccagatggcatcgtggcatttttcacc
agctacgtgtacatggagaatatagtggcgtcttggtatgaacagggtatcctagagaat
atccagagaaacaagctgatcttcattgagactccagatgctgcagagaccagcatggcc
ctggagaaataccaggaggcatgtgagaatggcagaggagccatcctcttgtctgtggcc
aggggaaaggtgtccgagggaatagattttgtgcaccactttggccgggcagtcatcatg
tttggagtaccttatgtttacacacagagccgcatcctaaaggctcgtctggagtacctg
cgggatcaatttcagatcagagagaatgacttcctgacatttgatgccatgcgtcatgcg
gcccagtgtgtgggcagagccatcagaggcaagactgactacggacttatgatatttgct
gacaagcgttacgcccgagcagacaaacgtgggaagcttcctcgctggattcaagaacac
atcaatgacggcagtctgaacctcaccgtggacgaggccgtccagctttccaagcatttc
ctgcgccaaatggctcagccttttagacaggaggaccagttgggtctgtctctgttgact
cttgaacagctggagtcggaggagatgctgcagaaaattgctcagattgctcatcagacc
tga
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