Epinephelus fuscoguttatus (brown-marbled grouper): 125889305
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Entry
125889305 CDS
T08419
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04510
Focal adhesion
efo04512
ECM-receptor interaction
efo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125889305 (col2a1b)
04518 Integrin signaling
125889305 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125889305 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125889305 (col2a1b)
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125889305 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
125889305
NCBI-ProteinID:
XP_049433126
LinkDB
All DBs
Position
LG1:complement(20059420..20128770)
Genome browser
AA seq
1489 aa
AA seq
DB search
MLSFMDSRTVLLLVATQVCLLAVVRCQEDDQDEFSCIQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQPPPIGVPGAKGQKGEPGDITDVVGP
RGPAGPMGPPGEQGPRGSRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQSGP
MGPRGPPGPSGKPGDDGEAGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLDGA
KGETGAVGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPPGP
VGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPGGV
QGPPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGA
SGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPAGPAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGPQGLQGP
RGLPGTPGTDGPKGAIGPAGAGGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPEGA
PGKDGGRGLTGPIGPPGPGGPNGEKGEAGPAGPSGAPGTRGAPGDRGETGPPGPAGFAGP
PGADGQPGLKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGTPGEKGD
AGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRGP
PGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAGGP
VGPTGKQGDRGEAGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGESGERGQKGHRGFTGL
QGLPGPPGQAGDQGATGPAGPAGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGETGP
AGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNME
TGESCVKPKPASIPRKNWWSSKSKDRKHIWFGETMNGGFHFNYGDDSLAPNTAAIQMTFL
RLLSTEASQNLTYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC
TKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattcccggactgtactgctacttgtagcaacccaagtctgtcta
ttagccgttgtaagatgtcaagaggacgaccaggatgagtttagctgtatacaagatgga
cagcgctatagcgacaaggacgtatggaaaccagagccttgtcgcatctgtgtgtgtgac
actggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaacct
gaaatcccattcggagagtgttgccccatctgcgcagctgaccagcctccacccattgga
gttcctggagccaagggtcagaaaggtgaacccggagacattaccgatgttgtaggacca
agaggaccagctggcccaatgggcccaccaggagagcaaggaccccgcggatcaagagga
gacaagggagagaagggaagccctggtccccgtggcagagatggtgagcctggcaccccc
ggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggtggaaac
tttgctgctcagatggctggtggcttcgacgagaaggctggcggcgcacagatgggtgtg
atgcaaggaccaatgggccctatgggtcccagaggaccacctggccccaccggatcacct
ggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatctggcccc
atgggtccccgtggcccccctggaccttctggaaaacctggcgatgatggtgaggctggc
aaacctggcaaaccaggcgaacgtggacctgctggacctcagggagctcgtggattccca
ggaactcctggcctgcctggcatcaagggacacagaggctatccaggtcttgatggtgca
aagggagagactggagctgttggggctaagggtgaggctggtgctcccggtgagaatggc
gctcctggaccaatgggacctcgcggtttgcctggtgagagaggccgtcctggacccagt
ggagttgctggtgcacgtggaaatgatggcttgcccggtcctgctggtccccctggccct
gtcggtccctctggagctccaggcttccctggctctcctggctcaaagggagaagccggt
cctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcaccccc
ggatcatccggaccttctggcgcttctggaaaccctggtactgatggtatccccggagcc
aaaggatcagctggtgctcctggtattgctggtgctcctggtttccctggacctcgtggg
cctcctgggcctcagggagcaactggacctcttgggcccaaaggaacatccggagaccca
ggtatcccagggttcaagggcgaggctggacccaaaggagaaattggaccaggtggtgtt
cagggacctcctggcccacaaggagaagagggcaagagaggaccccggggtgagcctggt
gctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggtttccct
ggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggtgcc
agtggtcccaagggtgctaacggtgaccctggccgccctggagagtctggtctgcccggt
gccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttggaccttct
ggagctgctggtgaggacggtcgcccaggaccccctggcccacagggagcccgtggacag
cctggtgtgatgggattccccggacccaagggagcaactggtgagcctggcaagtctgga
gagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaaacc
ggccctgctggaccccccggccccgccggccctgctggagagagaggagagcaaggacag
cccggtccctcaggtttccagggtctgcctggacctcctggcccccctggtgagggaggc
aaacctggagaccagggtgttcctggagagggtggagctgctggtgctactggacccaga
ggagagcgtggtttccctggagagagaggagctgctggcccccagggtttgcagggacct
cgtggtctgccaggaactcctggaactgacggacccaagggagccatcggacccgctggt
gctggtggagctcaaggaccccccggcctgcagggtatgcctggagagagaggagctgcc
ggcattcctggacccaaaggagacagaggtgacattggagagaaaggacccgaaggtgct
cccggcaaagacggtggtagaggtctcactggtcccattggtcctcctggtcctggtggt
cccaacggtgagaagggtgaagctggtcctgctggtccctctggagctcctggtacccgc
ggtgctcctggtgacaggggtgagactggacctcctgggcctgctggatttgctggacct
cctggtgctgacggtcagccaggactcaagggagagcagggagaatctggacagaagggt
gacgctggtgcccctggaccccaaggaccctctggtgcccccggacctgcaggtcctacc
ggtgtttctggacccaaaggtgctcgtggtgctcagggacctcctggtgccactggtttc
cctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacctgctggt
cctgctggcccccctggtaaagatggacccaagggtgtgaggggtgatggtggaccccca
ggcagacagggtgacgctgggctccgcggccctgctgggactcctggagagaagggagat
gctggagaggatggtccccctggtcccctgggtccttcaggtcctcagggtctggctggt
cagcgtggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggtcttccc
ggaccttctggtgagcccggaaagcagggagctcctggtggcagcggagaccgtggaccc
cctggacctgttggaccacctggactcactggacctgcaggagagcctggcagagagggc
aaccctggatctgatggccctcctggtagagatggtgcgactggaatcaagggtgatcgt
ggtaacaccggtcctgctggtgctcctggtgctccaggcgctcctggtgctggcggccca
gtcggtcccaccggcaaacagggcgacagaggagaggctggtgcacaaggaccctctgga
cctccaggacctgctggagccagaggaatgcctggacctcaaggaccccgcggtgacaag
ggtgaggctggagagtccggtgagcgaggacagaagggacacagaggcttcactggtctg
cagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacctgctgga
cctgctggacaaagaggaccacccggccctgttggccctgctggaaaggatggtggaaac
ggtctgccaggacccatcggaccccctggacctcgtggtcgcagtggagagaccggtccc
gctggtccccctggaaaccctggaccccccggtcctccaggcccccccggccctggcatt
gatatgtccgccttcgctggactgggtcagactgagaagtcccccgatcctctcaggtac
atgagggctgaccaggcttccggaaacctccgtcagcacgacgccgaggtcgacgccacg
ctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatccaagaagaac
ccggctcgcacctgcagagacctgaagctgtgccatcctgactggaagagcggagagtac
tggattgatcccaatcagggctgcaccatcgatgcaatcaaggtcttctgcaacatggag
acaggagagtcctgcgtcaaacctaagcctgcaagcatccctcgcaagaactggtggtcc
agcaagagcaaggaccgcaaacacatctggttcggagagacaatgaatggaggattccac
ttcaactatggtgacgacagcctggcacccaacaccgctgccattcagatgactttcctg
agactgctgtccaccgaggcttctcagaacctcacctaccactgtaagaacagcgtggcc
tacatggacgcctcagcgggcaacctgaagaaggccgtgctgctgcagggctccaacgac
gtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggctgc
acgaaacacacaggacagtggggcaagacagtgatcgaatacagatcgcagaagacttct
cgtctgcccattgtagacattgcccccatggatattggtggagcagaccaggagttcgga
gtggaagtcggggcggtctgcttcttgtaa
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integrated database retrieval system
