Epinephelus fuscoguttatus (brown-marbled grouper): 125891509
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Entry
125891509 CDS
T08419
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4959
SPOR
Motif
Other DBs
NCBI-GeneID:
125891509
NCBI-ProteinID:
XP_049436813
LinkDB
All DBs
Position
LG7:complement(8932697..8978768)
Genome browser
AA seq
1584 aa
AA seq
DB search
MSPHLLASSSSSSFWLMLCFLLSVVLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQ
GYKVRVRPISEVPQPELMLTTTRGRATVAGLESSQEYALQVLVLNGTTEKLLAKRRFTME
GLREEEMIRSGSREQRKKLLPGGSGSGDLDDVTEALLGLPTILYPDPTTTAAAATAEPTA
IETPSQLPDETPEKTSKEKRKRKKEKERDRSRVENKEEQGTTQDKATEEKPRKIPFPTQP
VTGMSPRKPFECDTDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPNYIQIGL
TQYSGDPRTEWQLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGARSGT
PFFLVLLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVND
FPLLSKLVARLVHILCGRIEDRGISKRMEPGPTADPALSYPSPTDLRFSELGSREVKLHW
TNPAKAVQQYRVVYHSAEGQSPQEVVLAGSESTVLLEGLSSQTLYHVSIFPVYENNVGLA
LRGTVTTLPLAMPANLEVTPSSYSTLRVSWGAAPGATQYMILYSALNHGEPDDAKEEKFS
ADQTVVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTFPLPPPVSVQFPMVTHSMLKV
SWAPGAVDVPGHRITYSTNHGSDVKQVEVTGLNSVLVQNLSSLSRYLVSVQSHYPQGLSA
ALTSNVTTLKVPAPTDLRVTNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRVSG
ESEGAILEGVEDEKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSISVSEETAVSMVV
SWVPPNAHVLQYRVTYTALTAAESQDSTVLVQGGEKRVVLESLQPDTRYSILVTAEYRNR
EGGSGSAQGKTTSLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIQSVKDKRTKEQTVD
ESSSSHCFTDLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRMYPIHNEVC
PEVTIRNNIVKGFDMMEAFGLTQRAHSSVEGVAAEPFVFNTLPTYTLYRDVQLTQSTKFI
HPAGFSPEHTISIAFRVLQETPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSLDYRG
EVQELTFDQSQVHRLFYGSFHKIHLSVSQVSVSLSVDCQRVGERPARPLGNLPTDGFEML
GKLVKTRGPNSGSVPFQLQSFEIVCNTTWALDDTCCDLPGVRDEEGCPAPAYTCTCSSDI
PGAPGSPGPSGKPGPRGEKGDKGEQGQKGEVGPPGKAGFEGGLGPLGSIGPRGMSVQGKV
GPPGARGEKGDAGRPGVQGLPGPPGPKGEEGIPGPKGIRGPEGNIGGPGITGPRGFQGMP
GHPGPPGERGFTGPVGPTGLSGGKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLKLDM
FINEISRKPAPVEEPVGPPGEPGIPGPKGPPGARGAQGHVGPRGRPGKAGYPGEQGRRGM
AGGKGDAGTNVQGPTGVKGFAGPPGESKLGIPGSKGEDGKPGSSGITGPPGQPGEIGPPG
VCDSSGGCHRVPQQTEDPYYGYQP
NT seq
4755 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcacctccttgcttcatcgtcatcatcatctttctggctaatgctgtgtttc
ctgctcagtgtcgtcttgctgctgtcttcaggggtccatggccaaggtcgtttaaagctg
acggtcctgtctgaggacagactgcagatgaagtggaaggaggctgatggacccgttcag
ggctacaaggtccgggtgagacccatctcagaggtgccacagccagagctgatgctgacc
accacacggggccgggcaacagtggcgggactagagtccagtcaggaatacgccctccaa
gtccttgtgctcaatggaacgacagagaaacttcttgcaaaacgacgattcaccatggag
ggtctgcgggaggaggaaatgatccgcagtggcagtcgagagcagaggaagaagttgctg
ccaggcgggtcggggtcaggagacctggacgatgtaacggaggctctgttgggcctgcca
acaattctgtatccagaccccaccaccactgctgctgcagctactgcagagcccacagca
atagaaaccccatctcagctccctgacgagaccccagagaaaaccagcaaagagaagagg
aagaggaagaaagaaaaagagcgggatcgttctagggtggagaataaagaggagcagggg
acaacacaggacaaagcaaccgaggagaaacctcgaaagatacccttccctacccagccg
gttacaggaatgtctccaaggaaaccgtttgagtgtgacactgatgcagccgcggacatc
atgttgttggtggacggctcctggagcattggacgcactaacttcagacgggtcagggac
ttcttggagggcttgatgacacccttccacatcgggccgaactacattcagattggcctg
acccaatacagcggagacccccgcacagaatggcagctcaacaacttcactactaaagac
cagctgttggaggcagtaaggaattttagatataagggaggaaacacatttacaggccag
gcgctgctccatgtcatggaggagaacatgagggctgaggcaggcgcgaggtcaggcaca
cctttcttcttggtcttgttgactgatgggaaatctcaggatgatgccattgctgcagcg
aaccggctgaagaatgctggtgtggagatcatcgctgtaggtgtaaagaatgctgatgag
gcggagttgagacaagtggcgtcggagccagtggatctgaacgtctacaatgtcaatgac
ttccctctgctcagcaaactggtggcgcgactggtccacatcctgtgtgggaggatagag
gaccgtggcatctcaaaacgaatggagcctggacccacagcagacccagccctctcctac
ccaagtccgactgatctccgtttctctgaactgggctccagagaagtgaagcttcattgg
accaatcctgctaaggcagtccaacagtacagagtggtctaccatagtgccgagggtcag
agtccacaggaggtggtgttggctggctcagagtccactgtgctgctggaaggcctctcc
tctcagaccctgtaccatgtgtcaatctttcctgtgtatgaaaacaatgttggcctggca
ctcagaggaactgtcactacattgccactggccatgcctgccaacctggaggtgactcct
tcctcttacagcacgctgcgagtgagttggggtgcagcgcccggtgcaacacagtacatg
atcctgtattcagcactcaaccacggagagcccgacgatgccaaggaggagaaattcagt
gcagaccagacagtggtggagctggcagggttactgccggcaacagactactctgtcact
ctttatgctctgtatgatgaggatcccagcgaccctgtcactgctgttgcaaccacattc
cctctcccaccaccagttagtgttcagttcccaatggtcacccacagtatgctaaaggtg
agttgggcgcctggagctgtggacgtccctggccacagaatcacctacagcaccaaccat
ggcagtgatgtcaagcaggtggaggtaacaggactgaactcagtgctggtgcagaacctt
tcctctctgtctagatacctggtttcagtccagtctcactacccacaaggcctttctgca
gcactcaccagcaacgtcaccacactgaaggtgcctgccccaacagacctcagggtgact
aatttctcaggcagtgatatcaccgtccgctgggaggctgcagccgatgatgttgtctct
tatctcatcaagtggatttccctcagtgggggagacctgagacagctgagggtgagtggt
gagagtgagggggcaatcctggagggggtggaggacgaaaaggaataccagatctctctg
tctgcactttatggagatggagctcagagtgaagctgtggccatacgctacagcaccttg
tctggtggaggcccatccagcatatcggtctcagaggagacagcggtcagcatggtagtc
agctgggtacctcccaatgctcacgtccttcagtatcgtgtgacatacactgccctgact
gcagctgaatcccaggacagcactgtgttagtccaaggtggtgaaaagcgggtggtgctg
gagtcattacagcctgatacacgttacagcatcctggtcactgctgagtaccgcaacaga
gaaggaggcagcggttcagctcagggcaaaaccaccagtctgagggttagtagtgtgagt
gtggtcaggtcagaccactccagtatctgtgtgtcttggagacctgtgtctgctgtcgat
ggatatcgtattgtcatacagtctgttaaagacaagcgaacaaaggaacaaactgtcgat
gagtccagcagcagccactgtttcactgatctggaaccagagactctgtatcgcatcagc
gtgcactcacttctgggctcagcagagggcgctgccgtctccattctccatccaacagcc
acagctcctgccagaattcccatccatcccagaatgtaccctatccacaatgaagtctgc
cctgaagtcaccatcagaaacaacattgttaaaggatttgacatgatggaagcatttggt
ctgactcagagagctcactcgtctgtggagggcgtggcagccgagccttttgtcttcaat
acgctccccacctacactctgtatagagacgtccagctgacacagagcactaagtttatc
caccctgcaggtttctctccagaacacaccatcagcattgcatttcgcgtcttgcaggaa
acacccagggagcctttcgctctctggcagctcactgacaacgacttccagcctaagatg
ggagtagtgcttgaccctactaccaagcatctggtgtatttcagtctggactacagggga
gaagtgcaggaactgacctttgaccagtcgcaggtccaccgactgttctatggcagtttt
cacaagattcacctgtctgtcagccaggtgagtgtgtccctatctgtggactgccagcgc
gttggtgagaggcctgcccgccctctaggcaacctaccaactgatggttttgagatgttg
ggaaaactggtgaagaccagaggacccaatagtggatctgtgccgttccagctgcagtcc
tttgagatcgtctgtaacaccacatgggctttagacgatacctgctgtgacctgcctgga
gtgagagatgaggagggctgtcctgccccggcgtacacctgtacctgttcctctgacatc
cccggagctccgggttcccctggaccatctggaaagccaggtcctcgtggtgagaaaggt
gataagggagaacaaggccaaaagggggaggtgggacctccaggaaaagccggatttgag
ggaggtcttggaccccttggcagcataggaccccgaggcatgtctgtgcagggtaaagtg
ggtccgcctggtgcaagaggggaaaaaggagatgctgggcgaccaggagtccagggttta
ccaggacctccaggtccaaaaggtgaagaggggattccaggccccaagggcattagggga
cctgaaggtaacattggtggacctggcataactggacccaggggtttccaaggaatgcca
ggacacccaggacctccaggggaaaggggcttcacaggacctgtgggacctacgggtctg
tcggggggtaaaggagagcgaggagagaagggggagcctcagtctatggctatgatctac
caactggtcacacaggcctgtgagcaactagtgcataaggaggtgttgaaacttgacatg
ttcattaatgagataagtcgtaagccagctcctgttgaggagccagtggggcccccaggg
gaacctggtataccaggacccaagggccctccaggtgccaggggcgcccaggggcatgtt
ggcccgagggggagacctggcaaggctggatatcccggagaacagggaaggagagggatg
gcaggggggaaaggtgatgcagggaccaacgtccaggggcccacaggtgtcaaaggattt
gcaggtcctccaggtgagtccaagctgggaatcccaggttccaaaggagaagatggtaag
ccaggctcttcagggatcaccggacctcctggacagccgggcgagattggaccaccgggt
gtgtgtgacagcagtggaggctgccacagagttccccagcaaacagaagacccttattat
ggctaccagccttag
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