Epinephelus fuscoguttatus (brown-marbled grouper): 125892302
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Entry
125892302 CDS
T08419
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04510
Focal adhesion
efo04512
ECM-receptor interaction
efo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125892302 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125892302 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125892302 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
efo00535
]
125892302 (col9a3)
Proteoglycans [BR:
efo00535
]
Extracellular matrix (ECM) proteoglycans
Others
125892302 (col9a3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125892302
NCBI-ProteinID:
XP_049438194
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Position
LG7:32200356..32222032
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AA seq
678 aa
AA seq
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MTVFSALWVLLLCQLLTSSSAQRPGPRGSPGPQGPPGPPGRDGTDGKTGPAGLPGKPGPK
GKAGIPGVAGKPGLPGLPGVDGLTGPDGPAGKDGPAGETGDAGPPGPPGPPGRGRPGAAG
LPGTNGLPGGVGPQGPAGAEGLPGLPGPPGPDGPPGLPGTLHDLSGDLLCPAICPPGPSG
ATGMPGFKGHTGHKGDKGEPGKNGEKGDAGPPGPPGIPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKPGIAGIIGKTGDPGEKGPQGFRGPKGEIGKIGPKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGAVGEKGPNGLPGLQGKAGGKGSKGEVGEPGKTGETGPSG
EPGIPGEIGVPGERGIAGPRGVAGGIGPVGNSGPQGVKGFQGVKGALGDPGLPGPTGIRG
EFGERGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQG
ELGARGPPGKPGLMGFQGEQGLPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPPGPSGKPGVAGSIGHPGPRGPPGYRGLPGELGDPGPRGDVGEQGDK
GSLGKAIDGPIGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGESGRVGRTGHQGPPGICDT
SACQGAAAAGKSTNPKNY
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttctctgcgctttgggtgctcttactgtgccagcttttgacatcatcctca
gcccagaggccgggccccagaggctctcctgggcctcaaggacccccagggccaccgggg
agggatggcactgatggcaaaactggacctgctgggctgccagggaaaccaggtcccaaa
ggaaaagcaggaataccaggggtagcagggaaaccaggcctgccaggacttccaggggtg
gacggtttgacaggtcctgatggtcctgctgggaaggacggacccgcaggggaaacaggt
gacgctggacctccgggaccacctggacctcctggcagagggagaccaggagctgcagga
ctacctggaactaacgggttgccaggtggagtcggaccccagggtccagcgggtgctgag
ggtcttccaggacttcccggacctcctggccctgatggaccaccaggtcttcctggtact
cttcatgatctttctggtgaccttctgtgtcctgccatctgcccccctggtccctctggt
gctactgggatgccaggattcaagggtcacaccgggcataaaggagacaagggagagcct
ggaaaaaatggagagaagggtgacgctggtccacctggcccacccggtatccctggcact
gtgggtctgcagggcccacgtggtctcagaggtttgcaaggcccaatgggatctgtagga
gacagaggcctgcccggtttcagaggcaaacctggcatcgctggcatcattggaaagaca
ggtgatccaggagaaaagggaccacagggattcagaggacccaagggagaaattggaaaa
atcggtcccaaaggaggtcctggaggagctggacccaaaggggagcctggtattcctggc
agagatggcaaagatggtacaccaggattagatggtgagaagggtgatgctggacgccac
ggagcagttggagagaaaggaccgaacggacttcctggtctacaaggaaaagccggtggg
aaggggtctaaaggagaagttggtgagccgggaaagaccggggagacgggaccctctgga
gagccaggtattcctggtgagattggcgtcccaggagagagggggatagcaggacccaga
ggagtggctggaggcattggaccagtgggcaactctgggcctcagggagtgaaaggcttt
cagggggtaaaaggagccttgggggatccaggtcttccaggtccaacaggaatccgtggg
gagtttggtgaaaggggtccagttggagcttctggagctaaaggagacatgggtgtggca
ggaagtgacggtctgccaggagagaacggagaacctggtccttttggcccagttggacaa
aaaggagagtctggaaagcgaggtgaactgggaccaaagggcgtgacgggtccacaagga
gagcttggggcaagagggcctccagggaaaccaggactaatgggcttccaaggggagcag
ggtctgcctggaattgcaggaaagacaggtgtacctggtaaactggcgagtgagcagcac
atcagagagctgtgtggctcgatgatcgatgatcagatcgcacagctggctgctaaccta
cgaagacccctggcccctggaatggtgggccgccctggccctcctgggccttcaggaaag
ccaggagttgctggctctattgggcatccaggtccccgcggaccaccagggtacagaggc
ctgccaggagaacttggagaccctggtcccagaggtgatgttggtgaacaaggtgacaag
ggatcccttggcaaagctattgatgggcccattggagaccaaggataccaaggtcttcct
ggagttcctggaattgtcaaagatgggcgcgatggatctccaggagatccaggtgagcct
ggagagtcaggcagggtaggtaggactgggcaccagggacctcctggaatctgtgacaca
tcagcctgccagggagcagcggccgctggaaagtccaccaaccccaaaaactattaa
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