Epinephelus fuscoguttatus (brown-marbled grouper): 125894339
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Entry
125894339 CDS
T08419
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03008
Ribosome biogenesis in eukaryotes
efo03013
Nucleocytoplasmic transport
efo03015
mRNA surveillance pathway
efo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125894339 (nxf1a)
03015 mRNA surveillance pathway
125894339 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
125894339 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125894339 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125894339 (nxf1a)
03009 Ribosome biogenesis [BR:
efo03009
]
125894339 (nxf1a)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125894339 (nxf1a)
mRNA cycle factors
Stress granule specific factors
125894339 (nxf1a)
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
125894339 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
UBA_8
LRR_8
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
125894339
NCBI-ProteinID:
XP_049441620
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All DBs
Position
LG9:complement(20117125..20130734)
Genome browser
AA seq
664 aa
AA seq
DB search
MNHLTLSQRSYPNLAVVTRVLNQDRGDFLVRREVRSTGYMVNGEHDDRTAPQFRNRKGRG
PHKGRSYDRSRRDRQRGSHAGGFGGPGPRSRLDDPDPDVTMSDSSQDSSSQHRFTPYGRH
KWKAGDGRFDRDRRGKGGGGGRGGFRDRPGGNGGGGKNRSGWYKVTIPHGRKYDKNWLLT
ALRNICSVPYTPVQYHVDHNRAHFYVDDSSAANALHKCSHKITDTDGYKVEVHVNPSAPP
SFLLAELKPEHLEHLKQCMAKRFDGSQQALDLNNIRTDPDLASQNIEVILNRKTNMEAVI
KIIEENIPELTCLNLSNNRIHKLDELTDLVSKAPNLKTLNLSHNELKSDRELDKVKGLKL
VELWLNRNPLCDLFKDHASYISAVRQRFPRLLKLDGHDLPAPIGFDVETPTTIPPCKGSC
FGSDEIKALILRFLQQYYSIYDSGDRQPLLDAYHDGASLSLTTPYSTQNPSRSSLGEYHK
DTRNLKRIKDSTIRFRLLKHTRLNVVAFLNELPKTQHDIASFTVDVNTYTNTLLSFTVSG
VFKEVAVDGKSRESTMAFSRVFITVPAGNSGLCIVNDQLFIRMATTEEIRRAFVAPAPTP
SSSPVPTLTAPQQEMLTAFSLKSGMNLEWSQKCLQDNEWDFNRAAQIFTQLKTDGKIPDV
AFIK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacctgactttgtctcagaggagctaccccaacctggctgtggtgacacgtgtg
ttgaatcaggaccgaggggactttttggtgaggagggaggtcaggagcactggttacatg
gtcaatggagagcatgatgacagaaccgcaccacagtttcgcaaccgtaaaggcagaggc
ccccacaagggtcggtcttatgacaggtcccgcagagaccgccaacggggcagccacgct
ggaggctttgggggtcctgggccacggtctaggctcgacgatcccgatccagatgtaacc
atgagtgacagctctcaggacagcagctcccagcacagattcaccccgtatggaagacat
aaatggaaggctggagatggacgctttgacagagaccggcgaggcaaagggggaggaggt
ggaagaggcggctttagagaccgacctggaggcaatggaggagggggaaaaaaccggtcg
ggctggtacaaagtaacgataccacacggaagaaaatatgacaagaactggttattgaca
gctcttaggaacatctgctcagtgccctacacacctgtacagtaccatgttgatcataac
agggcccatttctatgtggatgattcctctgctgccaatgctttgcacaaatgttctcac
aagatcacggacaccgatggttataaggtggaagtgcacgtcaaccccagcgctcctcca
tccttcctccttgcggagctgaagcctgaacacttggagcacctgaagcaatgtatggcc
aaacgttttgatggctcccagcaagcattggacttgaacaacatccgaacagacccagac
ttggcgtcccagaacattgaagtcatcttgaataggaagacaaacatggaggctgtcatt
aagatcattgaagaaaacattccagagctgacatgcttgaacctgagcaacaatcgtatt
cacaaactcgatgaactcaccgatttggtttccaaggcgcccaatctgaagactctcaac
ctctcccacaatgagctgaagtcagaccgggagctggacaaagtgaaaggcctgaagctg
gtggagctgtggctgaacaggaaccctctgtgtgacctcttcaaggatcacgcctcatac
atcagtgccgtgcggcagaggtttccccggcttctcaaactggatggtcatgacctccct
gcacccattggattcgatgtggaaacgcccaccactatccccccctgcaagggcagttgt
tttggctcagacgaaatcaaggccctcattctccggttcctgcaacagtactacagtata
tacgactcaggggacagacagccactcctggatgcttaccatgatggagcatcgttatcc
ctcacaacaccttactccacccagaacccttccaggagcagtctgggagaatatcacaaa
gacactcgaaacctgaagagaatcaaagactccacgatacggtttcgacttctgaagcat
acacgactgaacgtggttgctttcctcaatgagttgcccaagactcagcacgacattgcc
tcctttactgtcgacgtgaacacctacacgaacacactactgtcgttcacagtgagtgga
gtcttcaaagaagttgctgttgatggtaaatctcgagagtccaccatggctttctcccgg
gttttcatcactgtcccagcagggaactctggtttgtgcatcgtgaacgaccagcttttc
atccggatggctacaacagaggagatccgccgggccttcgttgctcccgccccaactcca
tcttccagccccgttcccaccctcactgcaccgcagcaggagatgctcacagccttctca
ctgaagtctggcatgaacctggaatggtcccagaagtgtctgcaagacaatgagtgggat
ttcaacagagctgcacaaattttcactcagttaaagacggatggcaagatccccgatgtt
gcattcataaaatga
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