Epinephelus fuscoguttatus (brown-marbled grouper): 125894352
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Entry
125894352 CDS
T08419
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125894352 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125894352 (polr1a)
Enzymes [BR:
efo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125894352 (polr1a)
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125894352 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
CDC45
DUF2277
Motif
Other DBs
NCBI-GeneID:
125894352
NCBI-ProteinID:
XP_049441636
LinkDB
All DBs
Position
LG9:complement(36552346..36587532)
Genome browser
AA seq
1699 aa
AA seq
DB search
MLFGKDVPWRRLEGMSFGMYSAEEIRKLSVKTITNFRFLDAVGNVAPNSLYDLALGPADS
KEVCSTCCQDFNHCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAIHLL
LNQLKLVDHGAMQDVYQIEQVLSQHLEENPKATGDEIEQVLKQFTATVIGVNAEASKNTK
PIKHLVEKKSSLINDFWKIHMKTRKCPYCRGGRVTVRREHNSKLIVTMPSGAQTVVNTDE
DLIAGKRVYLTASTAREHINKLWEREGFFLKCLFSGLEEGSVSKEGEKGFYPDLFFLDLL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGLIRKLLALIAGEKTTQEEEAPEQTDQ
TFLAGIPGQTLTDKLYNIWIRLQTHVNIVFDSDMDKMMTEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIETNEIGVPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GASMVINEDGRRTILSATNLAQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVMLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYMLVS
TDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYIELVYRGLTDKPGRVKLLPP
AILKPQPLWTGKQVVSTLLLNVIPQNAVPLNLIGKSKIPSKAWIQVPPRAAPGYKPDSMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKLGANRQRKKIIQESLKIGTNALQAAFNLPSNVDQAEAQSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNYEVIKRSQGLDEVLARLDPQAASKHFASIQRWKTKREMACPRRGAFLLFS
QKKLAKLKENEQMTEPDVHGRNAAVHQLIQQWHSLDESSRSKYSRKSTRCPEPSLGLLRP
DVCFGSVSENFHNITEKYLQSEGRTRKDSLDTHSLRQLLNYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNTKKALKR
AKMLRKKLTRVCLAEVLQKIDVVETLRIENHHKLRSFRVTFNFLPPDRYCDDKLLSPHQI
LHYMETRFFRLLLEAIKKRSAKLASIAVETRKATPRDRDNDGDGTADTAGLDDGEGEEER
EIVDDQANEGDADASDAKRKGKQEEEVDYESEDEDKADDGEDKEDQGEEEEEVEENVEKT
TLEESQSESAGMRMERKNKRAKGGRGGGDGEAEEALNQMRVNSVLESNSAIERYCYDQQH
ELWCEVDLVLPVSKVHFDLISVLSTLAQNAVIMETKGLTRCLLSETTTKTGEKETVLNTE
GINMHEMFKHSDILDIKRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFAVYGIEVDPRHL
SLVADYMCFEGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSQDQLVSPSACLV
VGKVVKGGTGLFELKQPLQ
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagatgtgccatggcggcgactggagggcatgtcgtttggcatgtac
tctgccgaagagataaggaagctgagcgtgaagacgatcactaacttccggttcctcgat
gctgttgggaatgtggccccaaacagcctctacgatctggcccttggaccagctgacagc
aaagaggtgtgttcaacctgctgtcaggacttcaaccactgtccaggacatctcggacac
gtagagctgcctctacctgtttacaacccacttttctttgataaactctacctgttgatt
cgcggatcctgtctttcatgtcacatgttaacgtgtccccgagcagccatccacctgctg
ctgaaccagctgaagttagtggaccatggagccatgcaggacgtctaccaaatagaacaa
gttctcagccagcacctagaggagaatcccaaagccactggagatgagatcgagcaggtg
ctcaagcagtttacagccacggtaattggagtgaatgctgaagcttcaaagaacacaaaa
ccaattaaacaccttgttgaaaagaagagcagtctgataaatgacttctggaagatccac
atgaagacgaggaagtgcccatattgcaggggcggcagggttacagtgcgccgtgaacac
aacagtaagctgattgtcacaatgccatcaggagcacagaccgttgtcaatactgatgaa
gatctgatagccggaaagagagtctacctgacagctagtactgcaagagagcacatcaac
aaactgtgggagagagaaggtttcttcttgaagtgtctgttctctgggctggaggagggg
tcggtgtcaaaggagggagagaaaggtttctatccagacctcttcttcctggatctgctg
gtggtcccaccttgcaggtaccgtccaatcaatcgacttggtgaccagatgtttacaaac
ggtcagacagtcaacatgcaggctgtcatgaaggactgtggactcatacgcaaacttctg
gctctcatagcaggagagaaaactactcaggaggaagaggctcctgagcagacagaccag
acattcctggccgggatccccggacagactctgacagataaactctacaacatctggatc
cgactgcagacccacgttaacatcgtctttgacagtgacatggacaaaatgatgacggag
aaataccctggaatcagacagattttggagaagaaggacggattgttccggaaacacatg
atgggaaaacgagtggattacgctgcacgatctgtcatctgtccagacatgtacatcgag
accaacgagatcggagtaccaatggtgtttgccaccaagctgacctacccccagcccgtc
actccctggaacgtgaaggagcttcgccaggcagttctcaacgggcccaacgtccacccc
ggtgcttccatggtgatcaatgaggatggcaggaggaccatcctatcagctaccaacctg
gcacagagagaagctgttgccaagcaactgctgacaccctgtcctggtccacataagatg
cccatgaagattgtgaatcgtcacataaagaacggagatgttatgttactaaacagacag
ccaactctgcacagaccctccatacaagcccactgtgcacgcatcttaccaggagagaag
gtactaagactccactatgccaactgcaaggcgtacaatgctgattttgatggagatgaa
atgaacgcgcacttccctcaaagtgagctgggcagagcagaggcctacatgttagtcagc
actgaccagcagtacctcgtccccaaggatggtaaacctttagcaggtctgatccaggac
cacatggtatcgggtacaaggatgacgatacgaggctgtttcttcaccagagtccagtac
attgagttggtgtacagaggactgacggacaaaccaggcagagttaaactgcttccgccg
gccatactcaaaccacagccactgtggacaggaaagcaggtggtgtctacgctactactg
aatgtcatcccacagaatgctgtgcctctcaacctgattggcaaatcgaaaatccccagc
aaagcatggatccaagtcccgccacgagctgctccaggatataaacctgacagcatgtgt
gactcacaggtggtgattcgtcagggggagctgttggtgggggttctggacaaagctcac
tacggctcctcagcctacggtctggtccactgctgctacgagctgtacggaggggagacc
agcggcaaactgctcagctgcctggctcgactcttcactgcttacctgcagctgtacaga
ggcttcactctgggtgtggaagacatcctggtgaagctgggcgccaacaggcagaggaaa
aaaatcattcaagaatcactgaagattggcactaacgccctacaggcagccttcaacctg
ccgtccaatgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaaccca
gaccagagagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtgaac
aacgacattaacaaggtgtgcatgccagtcggactacacacctctttccctgacaacaac
ctccaactcatggtccaatcaggagccaagggatctactgtaaacaccatgcagatttca
tgtctactaggtcagatcgagttagagggccgtaggcctccactgatgccttctgggaaa
tctttgccgtgcttccagccatatgacccttcacccggtgccggtggctttgtctctgga
aggttcctcacaggcattaaacctcaggagtttttcttccactgtatggccggcagagaa
ggactggtcgacacagctgtgaaaacatctcgatcaggatacctgcagagatgcgtcatc
aagcatctggagggtttggtggtgcagtatgatctgacagtgagggacagcgatggatcc
gtggtccagttcctgtatggtgaagatgggctggatatccccaagactcagttcctgcag
ccgagacagttccccttcatagaggacaattacgaggtcatcaagaggtcccagggcctg
gatgaggttttggcacgtttggaccctcaggctgccagtaaacactttgcatccatccag
cgctggaaaacaaagagagagatggcatgtccacggagaggagcgttcttgctgttttcc
cagaagaagctggccaaactgaaagagaatgagcaaatgacagagccagatgtccacggc
agaaatgctgctgtacaccagctcatacagcagtggcactctctggatgagtccagcaga
tcaaaatacagcaggaagtcaacccgctgccctgagccctctctgggcttgttaaggccc
gacgtctgcttcggatcagtttcggaaaactttcacaacattacagagaaatacctccag
agcgaaggcaggacgaggaaagacagcctggacacccacagccttcggcagctgttgaac
tataagtggcagcgctcactgtgtgacccaggtgaagcagtgggtctgctggcagctcag
tccataggcgaaccctccacccagatgaccctcaacaccttccactttgctggcagagga
gagatgaacgtcactttgggaatacctcgactgagagagatcctgatggtggccagctcc
aacatcaaaactcccatgatgagcgttccagtgctaaacaccaagaaagccttgaagagg
gcgaagatgctccgtaagaaactcaccagagtctgtctggctgaggtgctgcagaagata
gatgtggttgaaacgttgcggattgaaaatcaccacaagctgcggtcgttcagagtcacc
tttaacttcctgcctcctgaccgttactgtgacgataagctgctatcaccccatcagatc
ctccactatatggaaactaggtttttccgtctcctcctcgaagccattaagaagcgcagt
gccaagcttgcctccatcgccgtggaaacgaggaaggccacccccagagatagagacaat
gatggcgatggaacagctgacacagcagggttagatgacggcgagggagaagaggagcga
gagattgttgatgaccaggcgaacgaaggagacgccgatgcttcagatgccaagcgaaaa
ggcaaacaggaagaggaggtggactatgagagtgaggacgaggacaaagctgatgacggc
gaggataaagaagatcagggggaagaagaggaggaggtggaggagaatgtggagaagacg
acgctggaggagtcccagtcagagtctgcaggaatgagaatggagaggaagaataaacga
gccaaaggagggagagggggcggggatggagaagcagaggaggccctgaatcagatgagg
gtgaactctgttctggagtccaactcggcaatagagagatactgctacgatcagcagcat
gagctctggtgtgaggttgacctggtcttaccggtgagcaaggtgcattttgacctgatc
tcagtcctgtcaactctggcccagaacgccgtcatcatggagaccaaaggcttgacacgc
tgcctgctgagcgaaactacaacaaagacgggagagaaagagacagtcctcaacacagaa
ggcatcaacatgcacgaaatgttcaagcacagtgatatcttggacatcaaaagactgtac
tccaatgaggtccacgccatggctaagacctatgggattgaagtggctctgaaggtcata
gagaaggaaatcaaagatgtctttgctgtctatggtatcgaggttgaccccagacacctg
tcactggtagcagattacatgtgttttgaaggtgtatacaagccattaaaccggcacgct
atccggtccaactcctcccctctgcagcagatgaccttcgagaccagctacaaattcctc
aaacaggctaccatgctggggtcacaagatcagctggtgtcaccgtcagcctgcctggtg
gtgggaaaggtagtcaaaggtggaacaggactgtttgaactcaaacaacctctgcagtag
DBGET
integrated database retrieval system
