Epinephelus fuscoguttatus (brown-marbled grouper): 125894573
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Entry
125894573 CDS
T08419
Symbol
pcdh20
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-20
KO
K16498
protocadherin delta 1
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125894573 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
efo01009
]
125894573 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
efo04515
]
125894573 (pcdh20)
Protein phosphatases and associated proteins [BR:
efo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125894573 (pcdh20)
Cell adhesion molecules [BR:
efo04515
]
Cadherins
Protocadherins
125894573 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
125894573
NCBI-ProteinID:
XP_049442023
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All DBs
Position
LG9:complement(28257982..28262184)
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AA seq
891 aa
AA seq
DB search
MNSAFSCTGLGCCLCPXRSFAAGGTWVTCARAMGHGTPDNMNWAGLLQNLLVVVHLQQII
CGSVRFSIPEEQEPGTLAGSLSKHFPPPYQLLTQEYLWMDKNTGNFYTTEQKMDREALCP
EETKAEECIILHNAVVGPSGDLIQFPVIIEDINDNAPHFENSEIHLRVSEDVTVGTSFLL
DDQAQDSDARRNSELHYHLEDSNGVFSLKVDGDEPVIMLVVQTALDRETRDLYQMALVAT
DSGADPLSATATLIVTVTDVNDNCPSFSADSPRSVTIPGDSKKNMLVAQVRATDPDSGPN
AVIVYSLSPKVSERAKKLFSLDSLTGSIRLTQDLQSDNSEELLLKVLAIGHHCPPADIQV
TVSVVPKANQELAIKIGFIAEHQNQTMVIPENQPPTVLAVLELEGDSGFKGSSLAIESEV
PFTLSPQNGKYLLSTSKPLDYEMKSEHHISVVVHGRSAEGSVIAPSRRVIRVLVADVNDN
APHFLQSHYQLEVEENNQPGMSLLRVSASDADSGYNGRVTHRLDKHTSTIFNIDPVTGQL
SVSASLDREQQGVHKLTVFARDSGSPPLESVATVSIRVLDQNDNAPVFLTPHFIFFIPEN
VPPLAPVGRVGVTDPDEGENGNTELHVVNSSGPFVVDNTQGTLRTTTNLDRETDDRYELY
LLASDHGRPLALTSLARVTVFVEDINDNQPKVILPSSNSSCQTVSPGTIAGTIVTKIYAI
DEDSGLNSEITYTVVAPEPSQNSSPFQVDSRSGNITVAQQLLRKDLGMHHLFIVVRDGGK
PAPLYTTVWVNLLVNESMGPCLLDRAPTWTGTSDLVQTPSKASICEVEDTRSARLTLLVG
LGMMLASTCFLVAAAVLYLKQRRRSLQQNKRGHIEENEIPLRLKDKYYSDN
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaattctgccttcagctgtacaggtttaggttgctgtctctgtccttaacgttcattt
gctgccgggggaacttgggtaacatgtgcgagggcgatgggccatgggactcctgataat
atgaactgggctggactactgcagaatctgctggttgtggtccatctgcagcagatcata
tgcggttctgtccggttttccatcccagaggaacaggagcctggtactctggcggggtca
cttagtaaacactttccacctccgtaccagctcctgacccaggagtacctgtggatggac
aaaaacacagggaatttctacaccactgagcaaaagatggatcgcgaggccctctgcccc
gaggagacaaaagctgaggaatgcattattttacacaatgctgtcgtggggccctctgga
gaccttatacagttccctgtgatcatagaggacatcaatgacaatgcacctcattttgaa
aacagtgaaatacacttgagggtgtctgaggacgtgactgtggggaccagtttcttattg
gatgaccaggctcaggacagcgatgccagacgtaacagcgagctgcattaccacctagaa
gattcaaatggagttttcagtttgaaagtggacggagacgagcctgtcatcatgctggtt
gtgcaaacagctctagacagggagactcgggacctgtatcagatggcgctggtggccacc
gacagtggcgccgaccctttaagtgctacagcaactttaatagtcacagtgacagatgtt
aatgacaactgtccaagcttcagcgccgacagcccccgcagtgtcaccatccctggtgac
tccaagaagaacatgttggttgctcaggtcagagccacagacccagattcaggcccaaat
gctgtcatcgtatattccctcagtcccaaagtctctgagcgggccaagaagctctttagc
ctcgacagcctcactgggtccatcagactaacacaggacctccagagtgacaactccgag
gagctgctgttgaaagtgttagctatcggccatcactgccccccagcagacattcaggta
accgtatccgtggtccccaaggcgaaccaagagctggcgatcaagatcgggttcatagcc
gagcatcaaaaccagactatggtgataccagagaaccagccccccaccgtcttagctgtt
ttagagcttgagggtgacagcggctttaaaggctcatctcttgccattgagagcgaggtg
cctttcactttgagcccacagaatggcaaatatctgctttccacatcaaagcctctagac
tatgagatgaaaagcgaacatcatatttctgtggtagtgcacgggagatcagccgaagga
tctgtgatcgctccttccaggcgtgtgatcagggtgttggtggcagatgtcaatgataat
gctccacatttcctccagtctcactaccagctggaggtggaggaaaacaaccagccaggg
atgtccctgctgcgggtctcagcgtcagacgcagacagcggatacaatggcagagtgacc
cacaggctggacaagcacacatctaccatctttaacattgaccccgtgacaggtcaactg
tccgtgtcagcctctctggatagggaacagcagggcgtacacaaactcactgtgtttgca
cgagatagcggctctcctcctttggagtcagtggccacagtatccattcgtgttctggac
cagaatgacaatgcgcctgtttttctaacccctcacttcatcttttttatccctgagaat
gtaccaccgctcgccccagtggggagggtgggggtgacagacccagacgaaggagagaat
gggaacacagagctgcatgttgtaaacagcagtggaccttttgttgtggataatacccag
gggacgctgcgcaccaccacaaacttggaccgcgagacagacgaccgctatgaactctac
ctgctggccagtgatcacgggcgcccactcgctttaacttcccttgccagggtaactgtc
tttgtggaggacatcaatgacaaccagccaaaagtgatacttcccagcagcaactcctca
tgccagactgtctctccaggaactatcgcaggcaccatagtaacaaagatctatgccatc
gatgaggactcagggctgaactcagagattacatacaccgttgttgcgccagagccatca
caaaacagcagccccttccaggtggattcaaggtcggggaacatcaccgtggctcagcaa
cttctacgaaaagacctaggaatgcatcacctgttcattgtggtcagggatggggggaaa
ccagctccgctttatacaactgtgtgggttaatctgttggtcaacgagagcatggggccc
tgcctcttagacagggcccccacgtggacagggacatctgatttggttcaaaccccctca
aaggcctccatctgtgaggtggaggacaccagatctgcccgactgactctgttagtaggc
ctgggcatgatgctggcgtccacatgtttccttgtggcggcagctgttttatacctgaaa
cagaggaggagaagtctacagcagaacaagagggggcacatcgaagagaacgagattcca
ctcaggctcaaagacaaatattactctgacaactaa
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