Epinephelus fuscoguttatus (brown-marbled grouper): 125897198
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Entry
125897198 CDS
T08419
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125897198 (ddx1)
03016 Transfer RNA biogenesis [BR:
efo03016
]
125897198 (ddx1)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125897198 (ddx1)
Spliceosome [BR:
efo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125897198 (ddx1)
Transfer RNA biogenesis [BR:
efo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125897198 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
125897198
NCBI-ProteinID:
XP_049446278
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All DBs
Position
LG11:complement(12275035..12283387)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRASIKTGGAIFNNWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFSKNGNDLGVAFDIPQHVKNQPFFASCVLKNAELKF
NFGGDDFKNAPKSGFVALNKAPEGHTAKSTQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQFGKFVDNPKIRSLLVIGGVAAKDQLAALEQGIEIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRQWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKLLKGEYTVRAITEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKTNLERFKRKEVRHLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRAMGGGNYKGHVDVLAPTVQELAHLER
EAQSSFLHLGYLPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttctctgaaatgggagttatgcctgaaatcgcgcaggctgtggaggagatg
gactggctgctgcctactgacatccaggcagagtctattccgctcattcttggcggaggg
gatgtactcatggcagcagaaactggaagtggtaaaacaggagccttcagcatcccagtg
atccagatcgtgtatgagaccctgaaggatcagcaggagggcaagaagggccgagcttcc
atcaagactggaggagctattttcaacaactggcagatgaatccttacgaccgcagcaca
gcttttgccattggtccagacggactgtgctgccagagcagggagttcaaagagtggcac
ggctgtcgctctacaaagggagtcaccaaagggaagtactactatgaggtgacctgccat
gaccagggtctgtgtcgcgttggctggtccaccagtcaagcagccttggacttggggact
gataagtatggttttggttttggtgggactggaaagaaatccaacaacaagcagtttgac
agctacggagaggagttcaccatgcacgacaccatcggatgctacttggatctagacaaa
ggccaaatttctttctccaaaaatggtaatgacctgggtgtggcttttgacatccctcaa
catgtgaagaatcagcccttctttgcctcctgtgtgctcaagaacgcagagctgaagttc
aactttggaggagatgactttaaaaatgcccctaagagtgggtttgttgccctgaacaag
gcgccagagggccacacggccaaatctactcagacaggcagtgccaaagtgagtcaagtg
aaagcatcatccaacgcacccaaagccctgatcattgagccatctaaagaattggccgaa
caaaccctcaacaatgtcaagcaatttgggaaatttgtggataaccccaaaatcaggtcc
ctgctggtgattggtggtgtggctgcaaaagaccagctggctgctctggagcaggggatt
gaaattgtggtgggaacacccggcagactggatgacctgatatccactgggaagctcagt
ctgtctcaagtccgcttcctagtcctggatgagtgtgatggccttctgagtgcaggctat
acagacttcatcaacaggatccataaccaaatccctcaggtcacttctgatggcaagagg
ctgcaggtgatcgtttgttcagccacgctgcattcgtttgacgtgaagaagctgtctgag
cgtatcatgcactttcccacttgggtggacctgaagggagaggactctgtccccgagact
gtccaccacgtggtagtgcctgtcaatcccaagagcgatcggcagtgggagcgcctgggc
aagaaccacatccggactgatgaagttcatgccaaagataacaccagaccaggggccaat
tctgcagaaatgtggtcagaagccatcaagttgctgaagggcgagtacacagtgagagcc
atcacagagcacaagatggaccaggccataatcttctgtcgcaccaagattgactgtgac
aacctggaacagtacttcattcagcaaggaggaggtcccgacagtaaaggccaccagttt
tcttgcgtctgtctccacggtgatcgtaagcccaacgagcggaaaactaacttggagcgc
ttcaagagaaaagaagtgcggcacctgatctgcacagatgtagctgccaggggaattgac
atccacggagttccttatgtgattaatgtcaccctgccagatgagaagcagaactacgtt
catcgtatcggcagagttggaagagccgagagaatgggtctggccatctccctggttgct
atggaaaaagagaaggtgtggtaccacgtttgcgcgaaccgcggcagaggctgctacaac
acccgactgaaggaggacggaggctgcaccatctggtacaacgagaaagagctcctgtca
gatatcgaggagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtacct
gtggatgatttcgatggaaaggtcacctatggtcagcgcagggcaatgggaggtggtaat
tacaagggccacgtggatgttctggccccgacggttcaggagctggctcacctcgagaga
gaagcccaatcctccttcctccacctgggatacttgccgaaccagcttttcagagccttc
tga
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