Epinephelus fuscoguttatus (brown-marbled grouper): 125897227
Help
Entry
125897227 CDS
T08419
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03008
Ribosome biogenesis in eukaryotes
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125897227 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
125897227 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125897227 (xrn2)
03019 Messenger RNA biogenesis [BR:
efo03019
]
125897227 (xrn2)
03009 Ribosome biogenesis [BR:
efo03009
]
125897227 (xrn2)
03016 Transfer RNA biogenesis [BR:
efo03016
]
125897227 (xrn2)
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125897227 (xrn2)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125897227 (xrn2)
Ribosome biogenesis [BR:
efo03009
]
Eukaryotic type
Pre-60S particles
RNases
125897227 (xrn2)
Transfer RNA biogenesis [BR:
efo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
125897227 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
DUF8363
Motif
Other DBs
NCBI-GeneID:
125897227
NCBI-ProteinID:
XP_049446346
LinkDB
All DBs
Position
LG11:complement(31531128..31584152)
Genome browser
AA seq
975 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKQRIREEIISRGGYLPPEEIKERFDSNCITPGTEFMDNLARCLRYYVAD
RISNDPGWKNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCQGTAREKQGEHDEFADTMPVSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTQNGYVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KRKRMKAEQRGPAYLTTGQFAPQALGRRDRPEAVQNARHQAYDMRMQHNKDAAQSLKASM
RNGGNSAGPSGSADNRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDVTDEDF
RKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFTEFEKGTKPFKP
LEQLMGVFPAASGNFLPPTWRNLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPFVD
ERRLRAALSEVYPDLTTEEVKRNSLGSDVMFLGKSHPLFDFIHELYRTESHEGTEIPAEL
CHGIQGTLNLDDDPILPDKSVMSPIPMLRDISQNSAIGVKFRDPQYADGFVFKAVMLPGA
KIPNKVLKPGDWEKGNREPWRPQLGFNPNRQQAHLDQSGFRALGHSLSRNQHGGGQYSNT
PPPSSYQQGNYRAPHSGGHQPFQHSRQNSLLGAPPSFHQPQYPRQQQQQPYGGSRGHGWD
RATQMQQSAYQQNMNRGGAAAGSYHQHYDNRRDDWRDRRNDRRDDRRDNRGQQHQGYGSG
RGYPPPPPSRRYNWN
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagccgaaaatatgcatcaatcattgtgcac
tgtgttgaggagaaggggaaagaatgtaatggagttcgtattcctgttgacacaaccaag
ccaaaccccaatgaggtggaatttgacaatttgtacttggacatgaatgggatcattcac
ccttgtacacacccagaagacaaaccagctcccaaaaatgaagatgagatgatggttgcc
atatttgagtacatcgaccgcctgttcaacattgtgcggcccaggagagttctctacatg
gccatcgatggagtggctccacgggccaagatgaaccagcagcgctctcgacgttttcgt
gcctccaaagagggagtggagttggtggaggagaagcagcgcatcagggaagagatcatc
tcaagaggaggttatcttccacctgaggaaattaaagagaggtttgacagcaactgcatc
actccaggaacagagtttatggacaacctggcacggtgtcttcgatactacgttgcagac
agaattagcaatgatccaggatggaagaacatcacggtcttcctgtctgatgccagtgtt
cctggtgaaggtgaacacaagattatggacttcatcaggagacagagagctcaacccaac
cacgaccccaacacacaccactgtctgtgtggtgctgatgctgacctgatcatgctgggc
ctcgctacccacgagccaaacttcaccatcatcagagaggagtttaaacccaacaaacct
cgcccatgcgcactctgcggacagatgggccatgaaattaaagactgtcaggggacggcc
agagagaaacagggagagcatgatgagtttgcagacacgatgccagtgtctgaacaggag
ttcatatttatcagactctgtgtgctgcgggagtacctggccagagagctgaccatggcc
agcctgccatttccctttgactttgagaggagcgtcgacgactgggtcttcatgtgcttc
tttgtcggaaatgacttcctgccacatttaccgtccttagagatcagagagggggccata
gatcgactggtcaacatctacaaagacgttgtgcacaaaactgggggttacctgacacag
aacggctacgtcaacctggagcgagtggagctgatcatgcaggcagtgggcgtggctgag
gacaacatcttcaagaaacgcaaagaggacgatgaaggcttcaagagaagaatgaaagag
aaacgaaagaggatgaaggcggagcagcggggccctgcctaccttaccacgggccagttt
gcccctcaggccctggggagaagagaccgacccgaggctgtccagaatgcccggcatcag
gcctacgacatgaggatgcagcacaacaaggatgctgcgcagtccctgaaggcctcaatg
aggaatggtggcaattctgcagggcccagcggcagcgcagacaacagaggggtgaagagg
aaagctgaagacagtgacagcgagccggagcctgaggacaatgtcaggttgtgggaggag
ggctggaagcaaaggtactacaagaccaagtttgacgttgatgtgacagatgaggatttc
aggaagaaggtggttcagtcgtacgtggagggtctctgctgggttctgcgctactactac
cagggctgtgcttcctggaagtggtacttcccgttccactacgctccattcgcctccgac
ttcaaagacatcaaagggatgttcaccgagtttgagaaggggaccaaaccgtttaagcca
ctggagcagctgatgggagtgtttccggctgccagcggcaacttcctgcccccaacatgg
cggaacctcatgagcagtccggattcctccatcattgacttctaccccgacgactttgcc
attgatctcaacggcaagaaatacgcctggcagggtgtggccttgttgccttttgtggat
gaacgtcggctgagggcagctctgagcgaagtctaccccgacctcacaactgaggaagtg
aaaagaaacagcctggggagcgacgtgatgtttctcgggaagtctcacccgctgttcgac
ttcatccatgaactataccgcacagaatctcacgagggcactgagatccccgcagagctg
tgccatggaatccaaggtacattaaatcttgatgacgaccctattctaccagataagtca
gtgatgtcacctatcccaatgctgcgtgatatttcacagaacagtgcaattggagtgaag
ttcagggatccccaatatgcagatggttttgtgttcaaggccgtcatgcttcctggagcc
aagatacccaataaggtcctgaagccaggggactgggagaaggggaaccgggaaccatgg
aggcctcagctgggctttaacccgaacaggcagcaggctcacctggaccagtctggcttc
cgggctctgggtcacagtctgagcagaaatcaacatggtggaggacagtacagcaacacc
ccacctccaagcagctaccaacaaggaaactaccgtgctccacacagtggcggccatcag
cccttccaacattccagacagaacagtttgctgggagcgcctccctccttccaccagccc
caatatccaaggcagcagcagcagcagccgtatgggggcagcaggggtcacggttgggat
cgggccacgcagatgcagcagtcggcgtaccagcagaacatgaaccgcggaggggcagca
gcaggaagctaccaccagcactacgataaccgcagagacgactggcgcgatcgcaggaat
gatcggagggacgatcggagagacaaccgggggcaacagcatcagggctacggctccggc
agaggttaccctcctcctcctccatccagaagatacaactggaattaa
DBGET
integrated database retrieval system
