Epinephelus fuscoguttatus (brown-marbled grouper): 125897760
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Entry
125897760 CDS
T08419
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125897760 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125897760 (pcf11)
03019 Messenger RNA biogenesis [BR:
efo03019
]
125897760 (pcf11)
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125897760 (pcf11)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125897760 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
SHOCT
Motif
Other DBs
NCBI-GeneID:
125897760
NCBI-ProteinID:
XP_049447066
LinkDB
All DBs
Position
LG12:complement(41942626..41963698)
Genome browser
AA seq
1642 aa
AA seq
DB search
MDCLLISGYGIDQARVGFPGSLGSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYLLDVRVNSVDPAWPIKPLPPTVNASIHVNPK
FLKQSEEPSSPVPAPAQPQPPPPPATSASQPVPAISQSSLTQEQLIRQQLLAKQKQLLEL
QQKKIELELEQTKAQLAGGFVMPTATSVSTPATQSAALSTAPKTTSQTVPVVRPWLPPQT
QTDAKSTTRDPRLNRTGPPAASQAKEQPASKKDGLATPEKSTRPEKARTPRKDVLEDKAK
SKSPSPLAKSVQSKNKQAEAEILKSADGTKKDPRLKKRTQDKSGDARDEELKEKKRCTEK
KEREGAARGVDPQRSNKGKLVNGSVTKHDREEPAEKLEFKTGGNARTHARKRTRSRSRSR
SPATSPKRKDRRSPKSRARSSSLSPSPSHKAGKPRRVRAEEPEHGKPGREARLAPKKNQS
ENRRSKRPAEDRHSEARDSHSPRSHDGGGKEAKEAPHRWRSGWEENKHAKLPEEPHLKPS
GPPRHKQYGGPPRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEITEE
DFLNMAHKIKHFFQYQEERQRSDSWEESADFPAKKLPLLTTPGAPSQPRPHEGMDPAELS
YYEHKSKLRKTQVTHRNTGEEWDGEESPEESEETGQGEKTGRSAGHPPSHKYSRAPRDRP
GERRSKEREEPRPPLGPMIEEYHHGKEFPTLKSLPGLRFRRRADPRESKRSEVRFWSCGV
SGSRSGTLQQGEREWNSPLTERQRLDEREEQKSGYDAPRRYGQPVESRLPDPRRPEVPPP
SGTVVHRNCPSPAGLDPPAPRFERERLSPLHQKDSAEVSPVPRFESPNSEHSDDGPLNLD
APPLPPPPKSILKAPVRGGPLSSVRQHSDSPGHTPPHDGGHPSSRYDGPGHMGPSRPHPP
GWYESGGPGRFDESSRFDGPHHQGPGRFDGGGPPHHNMPERFDGPHMSHGPMRGGDNMGR
FDGPPHPQGPGRFDGPIGQQPPVRFDGPGPGPGHFEGPIQRFDGPLRFDNNMAPGPGSGP
MNFQQTRPIRFDGPPNQMGPMRFDGPGPLRFEGPVQQGPRFDLPNVPHQGGPPRFECAPS
QQGPLRFPPQHNLQPPMGPMAPPMYEPIAPPQNFNMAPQRFPEPMNPQFPAGPMAFPAQP
NLQPGGSFNMQAAPPFSQPGPVPFYNPAAPAVSMQQPVNMLANPNQPFLPQNPVPFGQQT
PQVAPPENHFGQVDVNDLLSKLISTGIIKPSQPDAAPTTTTTESSSTASAAPPVVEEEEE
EADEVEEEDDIPDLTSFTVDDMKQRYESVVTKLYSGNQCCLCSMRFTTAQTDMYADHLDW
HFRQNHAGKVASKKITHRRWYYTLTDWIEFEEIADLEERAKSQFFEKENEEEVQKSQAAA
KEKEFQSVKATKDQVGESCEICQEPFETYWVEEEEDWFLKNAVRVDDKNFHPACFEDYKN
SSYLDVTPSPNKLLTDHPLSAFIKSEEEEEGTSCEVAAAAATAASVSVKQEVKSEASELP
DVKKEEEEEVLRDEVQCEESKQ
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtatcgatcaggctcgtgtaggtttccccggg
tcgctcggctcaaagatggacgacaaagcggcgagggaagacgcgtgccgggagtatcag
tcgtctctggaggacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctg
gccgaggaaaacctcaacttcgccaaggatatcgtggcaataattgaagcgcaaatcagc
aaggccccatctgccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagagtctgttcaagctgcgctcgacgtgggac
gatgtgtttcctctcaagaaactctacctgctggacgtgcgggtcaactctgtggacccg
gcctggcccatcaagccgctgccgcccacagtcaacgccagcattcatgtcaaccccaag
tttttaaagcagtctgaggagccgtcctctccggtgcccgcccccgctcagccgcagccg
ccgccaccgccggcaacatcggcttcccagccggtccctgccatcagccagtcgagcctg
acccaggagcagctgatccgacagcagctgctggccaaacagaagcagctcctggagctt
cagcagaagaagatcgagctggagctggaacagacaaaagcacagctggccggtggattt
gtgatgccaacagcgacttcagtctcaactccagcaacgcagagcgcggcactgagcacg
gcaccgaagaccaccagccaaaccgtccccgtggtccgaccgtggctacctcctcagact
cagacagatgctaagtcgaccaccagagacccccgactgaaccgcaccggcccccctgct
gcctcccaggccaaagaacagcctgctagcaagaaggatggcctcgccacacctgagaaa
tccacccggccagagaaggccaggaccccgaggaaagacgtgttagaggacaaggccaag
tccaagtctccatctccgctggcaaaaagtgtccagagtaaaaacaaacaggcggaggcc
gagattctgaagtcagctgacggcacgaagaaagacccccgactgaagaaacgcacacag
gacaagagtggagacgccagagacgaggagctgaaggagaagaaaagatgcacagagaag
aaggagcgagagggcgccgcccggggggtcgaccctcagcggtccaacaaggggaagctg
gtgaacggctcagtgaccaaacacgaccgcgaagagcccgcggagaagctcgagttcaag
accggaggcaacgcccggacgcacgccaggaaacgtacccgctcccgctccaggtctcgc
tcccccgccacctccccaaagaggaaggacaggcggtccccaaagagcagagcccggagc
agctccctgtccccgtctccctcccacaaagccggcaaacccaggagggtccgcgcagaa
gaaccggagcacggcaagcccggcagagaggcccgcctcgcgcccaaaaagaaccaatca
gaaaacaggaggtcaaagaggccggctgaggatcggcactctgaggccagagactctcac
tccccacggagccacgacggaggaggcaaggaggccaaggaggctccccaccgctggagg
agcggctgggaggagaacaaacatgcgaagctgccggaggaacctcacctgaagccctca
ggacctcccagacacaaacagtacggcggcccgcctcgccccaccaccccccgaaccccg
aagcatcgcctcagcgtagacgccaatctgcagatacctgaagtcctcaactccgcctcc
aagaaggacctgctgaggagggccagtaagcgtctggagagcggcgagatcaccgaggag
gacttcctgaacatggcccacaagatcaaacacttctttcagtatcaggaggagaggcaa
cgctccgacagctgggaagagtccgctgacttccctgccaagaaactgccgctgctgact
accccgggtgccccctcccagccacggccccatgaaggcatggacccagcggagctgtca
tactacgaacacaagtccaagctcaggaagacgcaggtcacccatcgaaacaccggggag
gagtgggacggcgaggagagtccggaggagagcgaggagactgggcagggtgagaagacg
ggccgcagcgccggacacccgccatcacacaaatacagccgggcgccacgggacagacca
ggtgagaggaggagtaaagagcgtgaggagccccgcccaccactcggccccatgatcgag
gagtaccaccatggcaaagagttccccaccctgaagtctctgccgggccttcgcttcagg
aggagagccgaccccagagagtccaagaggtcagaggtcaggttctggagctgcggggtg
tcagggtctcgatcagggacacttcagcagggtgagagggagtggaactctccgctgaca
gagcgccaacgccttgacgaacgtgaagaacagaagagcggctacgatgctccgcggagg
tacggccaacctgtcgaatccaggctccctgacccacggaggccagaggtgcccccgccc
tccggcaccgtggtgcacaggaactgtccgagtccagctggtctggacccgccggcgccc
aggtttgagcgtgagcgcctgtctcctctacaccagaaagactctgcagaggtgagccca
gtcccgcggttcgagagccccaacagtgaacactccgacgatgggccactcaatctggat
gcccccccgcttccccctccacccaagtccatcctcaaggcgcctgtccgtggaggaccg
ctgtcttctgtccgacagcacagtgactccccaggacacacacctcctcatgatggagga
cacccctcctcccggtacgacgggcctggacacatgggtccctccagaccgcaccctcca
gggtggtacgaaagcggtggacccgggcgcttcgatgagtcgtcccgattcgacggtcct
caccaccagggtcctggcaggtttgatggcgggggaccgcctcatcacaatatgccagag
aggtttgacggaccccacatgtctcacggtccaatgaggggcggagacaacatggggcgg
tttgacggtccacctcaccctcagggccccgggagatttgatggtcccattggtcagcag
cccccggtcaggttcgacggtccagggcccggaccgggtcactttgagggtcctattcag
cgctttgacggcccgctgcgctttgacaacaacatggctcctggtcctggatctggacca
atgaacttccagcagacgcgacccatccgctttgacggccctccaaaccagatgggcccg
atgaggttcgatggccctggtccgctgcgcttcgaggggcccgttcagcaaggtcccagg
tttgacttacccaacgtgccccatcagggtgggccaccgcggttcgagtgtgcccccagc
cagcagggccccctgaggtttcctcctcaacacaacctgcagccccccatggggccgatg
gccccacccatgtacgaacctattgcccccccgcagaacttcaacatggccccccagcgc
ttccctgagcccatgaaccctcagttcccggcggggccaatggcgttcccagctcagccc
aacctgcagccaggaggaagcttcaacatgcaggcggcgccgcccttcagccagccaggc
cccgtccccttctacaaccccgctgcccccgccgtcagcatgcagcagccggtaaacatg
ttggcgaaccccaaccagcccttcctgcctcagaacccagtgcctttcggacagcagact
ccgcaggttgcccctccagagaaccacttcggtcaggttgacgtcaacgacctgctttcc
aaacttatttccaccggcatcatcaaaccctcgcagcccgacgccgcaccgaccaccacc
accacggaatcatcttccacagcctcagcagctccgcctgtggtggaggaggaggaagag
gaggcggatgaggtggaggaggaagacgacatcccggacctgaccagcttcactgtcgat
gacatgaaacagcgttacgagagcgtggtgaccaagctgtactcagggaaccagtgctgc
ttgtgcagcatgaggttcaccaccgctcagaccgacatgtacgccgaccacctggactgg
cacttcagacagaaccacgccggcaaggtcgccagcaagaagatcacacaccgccgctgg
tactacacgctcacggactggatagagttcgaggagatcgccgacctggaggagcgagcc
aagagtcagttctttgagaaggagaacgaggaggaggtgcagaagagccaggcggccgcc
aaggagaaggagttccagagcgtgaaggccaccaaggaccaagtgggagagtcgtgtgaa
atctgtcaggagccctttgagacgtactgggtggaggaggaggaggactggttcctgaag
aacgccgtcagggtcgacgacaagaacttccaccccgcctgttttgaagattataaaaat
tcgtcgtacctcgacgtcacgccgtcgcccaacaagctgctcactgatcatccgctgagc
gctttcataaagagcgaagaagaggaggagggcacttcctgtgaagttgctgctgctgcc
gccaccgccgcctcagtctcagtcaaacaggaagtgaagtctgaggcgagcgagcttccc
gatgtgaaaaaagaggaggaggaggaggttttaagagacgaagtgcaatgtgaggagagc
aaacagtga
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integrated database retrieval system
