Epinephelus fuscoguttatus (brown-marbled grouper): 125898312
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Entry
125898312 CDS
T08419
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03030
DNA replication
efo03420
Nucleotide excision repair
efo03430
Mismatch repair
efo03440
Homologous recombination
efo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125898312
03420 Nucleotide excision repair
125898312
03430 Mismatch repair
125898312
03440 Homologous recombination
125898312
03460 Fanconi anemia pathway
125898312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
efo03000
]
125898312
03032 DNA replication proteins [BR:
efo03032
]
125898312
03400 DNA repair and recombination proteins [BR:
efo03400
]
125898312
Transcription factors [BR:
efo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125898312
DNA replication proteins [BR:
efo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125898312
DNA repair and recombination proteins [BR:
efo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125898312
MMR (mismatch excision repair)
125898312
DSBR (double strand breaks repair)
HR (homologous recombination)
125898312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SOG2
Motif
Other DBs
NCBI-GeneID:
125898312
NCBI-ProteinID:
XP_049448041
LinkDB
All DBs
Position
LG12:30363283..30418574
Genome browser
AA seq
664 aa
AA seq
DB search
MSLKLTQGAVEALFKGEEVNNPVLQVLNMRQIINGDAPPRYRLMMSDGQHSLSSFLLATQ
LNNLPEENLLVPNCLCMIKKTITNTLSDGRHVVIVLDMEILQSAEETGGKIGNPTPYNTD
GKTSSSQKMDSDTSVPAPPPSAAVPGPSYANTSTFPPPQGRGRGFVGKSPMKASPMNVSP
MKASPMTVSPMKASPTKFSPMKASPMNVSPMKGTPTKFSPMKASTSTPPGPSTKVTPIAN
LNPYISKWTIKARVTNKSNIRNWSNSRGEGKLFSFEIVDESGEIRITAFNNEVDKFFSLV
EQGKVYYITKGTLKAANKQYTTLKNDYEMTLHAQSSIVPCDDTQGVPTVHCDFVPIAELE
NRDKDAILDVIGVCKSAEDVSRITTKTNREVSKRALDLIDTTGKVVTVTLWGEEAEKFDG
SGQPVVAIKGARLSDFGGVSLSALFSSTVMVNPDLPEAFSLRAWYDQGGFALASQSLTET
RSVGSGAKTNWKTLSDIKNENMGHGEKADYFSCIATVLYTRKENCLYQACPTADCYKKVI
DQQNGLYRCEKCDREFPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHNADTLGLLR
ETDEAAFDEVFQKTNFTTHIFRNRVKLETYNDESRVKVTVMEVQPVDHREYSRRLLSNIR
KLAG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaaaactcacacaaggggcagttgaagccctgttcaaaggtgaagaggtgaac
aatcctgtgctgcaggtgctgaacatgcgtcagatcataaatggcgatgcacctcccagg
taccggctcatgatgagtgatggtcagcactctctgtcttccttcctgctggccacacag
ttaaacaatctcccagaagagaacctcctggtacctaactgtctgtgcatgataaagaaa
accatcaccaacacgctgtcagatggcaggcatgtggtgattgtgttggacatggagata
ttgcagtcagccgaggaaactggagggaagattggaaatcccactccatataatacagat
ggtaagacgtcatcgtcacagaaaatggactcggatacctctgtcccggcgccccctcca
tctgcggcagtacctggaccctcctatgcaaacaccagcactttccctcctccccaaggc
cgaggaagaggttttgtgggaaagtcgcccatgaaggcttcaccaatgaacgtttcaccc
atgaaggcttcaccaatgactgtttcacccatgaaagcgtcgcccacaaagttttcaccc
atgaaggcttcaccaatgaatgtttcacccatgaaaggcacacccacaaagttttcaccc
atgaaggctagtaccagcactcctccaggcccttcaacaaaagtgactcctattgcaaac
ctcaacccctacataagcaagtggactatcaaagcccgagtcaccaacaagtccaatatc
cgcaactggagtaactctagaggagagggcaagctcttctcttttgagatagtggatgag
agtggagaaatcaggatcacagccttcaataacgaagtggacaagtttttctctctagtg
gagcaaggcaaggtgtactacatcactaagggtacgctgaaggcggccaacaaacagtac
accacactgaagaacgactacgagatgaccctacacgctcagtcatccatcgtgccgtgt
gatgacactcagggtgtccccacggtgcactgtgactttgtgcccatcgcagagctggag
aacagagacaaggatgccatccttgatgtgattggagtgtgtaagagcgcagaggatgta
tcccgtatcaccactaagaccaacagagaagtctccaagagggccctcgacttaatagac
acaactggcaaagtggtgacagtcacactgtggggagaggaggcggagaagtttgacggc
tctgggcagcctgtggtggccatcaaaggagctcgcttgtctgatttcgggggcgtctct
ctctctgcgttgttcagttcaacagtcatggtcaacccagacttaccggaggctttcagt
ctgcgggcctggtacgaccagggaggttttgcgctcgccagccaatccctgacagagacg
aggtcggtgggcagcggagcaaagacaaattggaaaacactgagcgacattaagaatgaa
aacatgggacatggagagaaggcggattatttcagctgcatagcgacagtgctgtacact
cgtaaggagaattgtctataccaggcctgtccaactgcagactgctacaagaaggtcatc
gaccagcagaatggactgtaccgctgcgagaagtgtgaccgagagttccccaacttcaaa
tacagactcctgctttccgccaacttggcagacttcggggataaccagtgggtgacatgc
ttccaggagacagctgaggtcctgttaggtcacaatgcagacacactggggctgctcaga
gaaacagacgaggctgcattcgatgaagtctttcagaaaaccaacttcacaactcacatc
tttcgaaacagggtcaagctggagacgtacaacgatgagagtcgagtgaaggtaaccgta
atggaagtccagccagtcgaccaccgggaatacagcaggagactcctcagtaacatccgc
aaattggccggctga
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integrated database retrieval system
