Epinephelus fuscoguttatus (brown-marbled grouper): 125898399
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Entry
125898399 CDS
T08419
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125898399 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125898399 (ddx46)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125898399 (ddx46)
Spliceosome [BR:
efo03041
]
Complex A
U2 snRNP components
U2 related factors
125898399 (ddx46)
Complex B
125898399 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
125898399
NCBI-ProteinID:
XP_049448144
LinkDB
All DBs
Position
LG12:37559942..37574510
Genome browser
AA seq
1058 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDRSRRERSRSRDRRRSRSRDRKRARR
SRSRERRRSRSRERRRSGSRNRARRSRSGSPGKGRRPDEKSRSKEKDNIDPLSDKKKIKE
EKEDDKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWS
LEDDDDDDEDVSAPMEGDDDDDGDGKGDRKDRDIKEEDKEGEKEKETPMEQQAEEDDVDP
LDAYMEEVKQEVKKFNMGGMKGNDKKGAMTVTKVVTVVKTKKGPHTHKKKGELMENDQDA
MEYSSEEEEVDLQTALTGFQTKQRKILEPVDHGKIQYEQYRKNFYVEVPELARMTPEEVN
TYRLELEGITVKGKGCPKPIKTWVQCGVSMKILSAMKKHSYEKPTPIQAQAIPAIMSGRD
LIGIAKTGSGKTIAYLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKKFSKP
LGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVMDEA
DRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSIVCS
DVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHG
GIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVINYNCPNHYEDYVHRAGRTG
RAGNKGFAYTFITEDQARYAGDILKALELSGSPVPPELEQLWTSFKDQQKAEGKTIKSSS
GFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRVKDLS
APGAAAGPTGTTTTTTTVPGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAEAQDVM
QQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETIKRYE
EELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESA
NELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcaagacattacagaaagcgctccgcgtcgcggggacggtcaggcagc
cgatcaaagagccgctctccggacaaacgctccaagaaagacgaccggagcaggagggag
cggtcacggagccgggaccgccgcaggtcccggtccagggacagaaaacgagccaggcgc
tccaggagcagagagaggaggaggtccagaagccgagaaaggaggaggtcgggcagcagg
aaccgagccagaaggtcccgatctggtagccctggcaagggcaggagaccagatgaaaag
tcaaggagcaaggagaaagacaacattgatcctttatctgacaagaaaaagattaaagag
gagaaagaggacgacaaggttgaggatcaagactttgaccagaacaagcttgaggaggag
atgaggaagaggaaggagcgtgtggagaagtggagggaagagcagaggaagaaggcaatc
gaaaacatcggagagatcaagaaagaactggaggagatgaagcagggcaaaaagtggagc
ttggaggatgatgatgacgatgacgaggatgtttccgcgccgatggagggagatgatgat
gacgatggggatggaaaaggggacagaaaagacagggacataaaggaagaggacaaagag
ggtgagaaggagaaggagactcccatggagcagcaggccgaggaggacgatgtggatcct
ctggacgcctacatggaggaggtgaaacaggaggtgaagaagttcaacatgggaggcatg
aaaggaaacgataagaaaggagcaatgacagtgaccaaagtggtgacagttgttaaaacc
aagaaagggccccacactcacaagaagaagggtgagctgatggagaatgaccaggatgct
atggaatactcatcagaggaggaggaggtggatctgcagacggctctgacgggcttccag
acaaaacagaggaagatcctcgagcctgttgaccatgggaagattcagtatgagcagtat
cgcaaaaacttctacgtggaggtccctgagctcgcccggatgactccagaagaggtgaac
acatacaggctggaattggagggcatcactgttaaagggaagggctgtcccaaacccatc
aagacctgggtgcagtgcggagtgtctatgaagatcctcagcgcaatgaagaagcacagc
tacgagaagcccacccccatccaggcccaggccatccctgccatcatgtcgggccgagac
ctcattggcatcgctaagaccggcagtgggaaaaccatagcctacctgctgcccatgttc
cgacacatcatggaccagaggcccctggaggagtctgagggaccaatctctgttatcatg
actccaacccgagagttggctctgcagatcaccaaggagtgtaagaagttctccaaacca
ctgggactcagggtggtgtgtgtttacggaggcacaggcatcagcgaacagattgctgag
ctgaagagaggagctgagatcatcgtgtgcacaccgggaagaatgattgacatgttgggg
gccaacagcggtcgagtcaccaacctgcgcagagttacatatgtggtgatggatgaagca
gacaggatgtttgacatgggcttcgagccacaggtgatgcgtattgtagacaacgtgcgt
ccagaccgtcagacggtcatgttttcggccaccttccccagagccatggaggcgctggcc
cgtaggattctgtccaagcccattgaggtccaggtgggaggccgcagtatcgtctgctct
gatgtggaacaacacgtgctggtgattgaggaggacaagaagttcctgaagctgctggag
attctgggtcattaccaggagaagggctctgtcatcatctttgtggacaaacaggagcat
gcggacggactgttaaaagacctgatgaaagcctcgtacccctgcatgtcgctgcacgga
ggaattgaccagtacgacagagacagcattatcaacgacttcaagaatggagcatgccgt
ctgatggtggccacctctgtggcagctagaggcctggacgtcaagcagctgatcttagtg
atcaactacaactgtcccaaccactatgaggactatgtccacagggccggacgcactggc
cgagcaggcaacaagggctttgcctacaccttcatcacagaggatcaggctcgctatgct
ggggatatcctcaaagccttggagctgtctggctctcctgtcccgcctgaactggagcag
ctttggacctccttcaaagaccaacagaaagcggagggcaagaccattaagagcagcagc
ggcttctcaggaaaaggcttcaagtttgacgagacagaacacgccttggccaatgagagg
aagaagctgcagaaagctgctcttggactgcaggactctgacgatgaagatggagccctg
gacatcgaagagcaaatcgagagcatgttcaactccaagaagagggtgaaggacctgtct
gctcccggggcagctgccggtcccacaggaacaactacaaccacaacaactgtccccgga
gggctgccaggcctcggacccacatctgctggaaacatccagaaactggagatggccaag
aggctggcgctcaagatcaatgctcagaagaacctgggtgccgaggcacaggatgtgatg
cagcaggccaccaacgccatcctgcgcggcggcaccattatgacaccctcggtgtcagcc
aagaccatcgcggagcagctggcggagaagatcaatgccaagctgaactacacccctgtg
gagaagctggaggaggagcggcaggcggctgaacaggccgagaccatcaagagatacgaa
gaggagctggagatcaatgacttccctcagacggccaggtggaaggtgacctctaaagaa
gctctgcagaggatcggtgaatactctgaagctgccatcaccatcagaggaacctatttc
cctccaggcaaagagcccaaggaaggagagcgcaagatctacctggctattgaaagtgca
aatgaacttgctgtgcagaaagccaaaacagagattacgcggttaatcaaagaagagctc
atcagattacaaaattcctaccagccgacgagcaaaggccggtacaaagtgttgtag
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integrated database retrieval system
