Epinephelus fuscoguttatus (brown-marbled grouper): 125899346
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Entry
125899346 CDS
T08419
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125899346 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125899346 (prpf40a)
Spliceosome [BR:
efo03041
]
Complex A
U1 snRNP components
U1 related factors
125899346 (prpf40a)
Complex B
125899346 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
125899346
NCBI-ProteinID:
XP_049449521
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Position
LG13:complement(19932381..19952990)
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AA seq
879 aa
AA seq
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MSSTDANNGPSQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRIPAAAVQPTGPPGVDSTAAAPGTASTT
NGSPQEEQPKKKSVWTEHKSLDGKTYFYNTETKQSTWEKPDDLKSPAEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAEAMAPGTTAAPAVQADNTATM
ATVMEAETATAVSEEHLSQAAVHHTAEVKAVEAPVASLESAVATEATASVEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFNELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGVRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEDYHKKKKRSQSKSPSERSSSGESERS
YKKSKKHKKKAKKRRHKSASPDSDADKKGRERDGKREKDLERDKENDKSRGKSRSDSKQK
SPKRKAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgacggacgctaataatggcccgagccaagcgccaccttatccaggcgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctccc
atcggaatgccccccatgggacagagaccgcccagcatgacacctatgcctcctggtata
attccccctggtataatgccaccaatgggggcaccaccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcataccagctgcggctgtacaa
ccaacgggaccgcccggtgtcgactccacagctgctgcacctggaacagctagcaccaca
aatggatctccacaggaggagcagccaaaaaagaaatctgtgtggacagaacacaaatca
ctggatgggaagacgtacttttataatacagagactaagcagtccacatgggaaaaacca
gatgatctcaagtctcctgcagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcggacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatctggaagctatgatcaaagcagaggagaatggaacggcagag
gcgatggctcctggcaccacagcagctcctgcagtgcaagcagataatacagccactatg
gcaaccgtaatggaggcagaaactgcaacagcagtctcagaggaacacctgtctcaggcg
gccgtgcatcacacagctgaggtcaaggctgtagaagcacctgtggcttccttagagagc
gcagtcgccacagaggccacagccagtgttgaagtcacaaaagaggaacggccagaactt
cagaagaaaacttacaagtggaacacgaaagaggaggccaagcaggcgttcaaagagctg
ctgaaggagaagggtgtgtcctcaaactcctcttgggagcaggctatgaaaatgattatc
aatgatcctcgctacagtgcacttcccaaattgagtgagaagaaacaggcgttcaatgcc
tacaaagtccaaacagagaaggaggaaaaagaggaggccagaattaaatacaaagagtcc
aaagagacctttcaaaggttcttggagaaccacgataagatgacatctaccaccagatac
aagaaagcagagcagatgtttaatgagctcgaggtgtggagctgtgtaccagagagagac
aggctggagatctatgaagatgtattgttctacctggctaagaaagagaaggagcaagcc
aagcagctaagaaagaggaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgcaccacctggtctgaggcccagcagtatctgctagacaaccctaccttt
gcagaggacgaggagctgcagaatatggacaaagaagatgccctcatttgttttgaggag
cacatccgggcactggagaaggaggaggaggaggagaaacagaagactcttctcagggag
aggagacgacaacgcaagaacagagaggccttccagaaattcctggatgagctccacgat
cacggtcagcttcactccatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgcttcgccaacatgctgggccagccaggttccactcccctagatctgttcaaattc
tatgtggaggacttgaaagcccgctaccatgatgaaaagaggatcatcaaagatattctt
aaggacaaaggcttcctggtggaagtcaacaccagctttgaagactttggatcagtcatc
agctcagacaagagagccaccacactggatgcaggaaacatcaagctggcattcaacagt
ttactggagaaagcagaagccagagagagagaacgagagaaggaggaggccaggaagatg
aaaaggaaggaagcagcctttaaaaacatgctgaagcaggccacaccaccgctggagcca
gaaaccacatgggagggggtcagagagagattcttaaaggagtctgcctttgaagacgtg
actctggagtcggagaggaaaaggatattcaaagacttcatgcatgtcttagagcatgaa
tgccaacatcaccactccaagacaaagaagcattcaaagaagtccaagaagcaccacagg
aaacgatcccgctctcgatcgggctcagagtctgaagatgaagattaccacaagaagaaa
aagcggtcacagtccaaatctccttctgaacgctcgtctagtggagagtcagagagaagc
tataaaaaatccaagaagcacaagaagaaggcaaagaagagacgtcataagtctgcatcg
ccagactctgatgctgacaagaaaggaagagagcgcgatggaaagcgtgaaaaggattta
gagagagataaagagaacgacaagtctcgggggaaatctcgctctgactctaaacagaag
tctccgaaaagaaaagctgcaaaagaggagggcggctgggacacgtcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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