Epinephelus fuscoguttatus (brown-marbled grouper): 125899832
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Entry
125899832 CDS
T08419
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
efo04147
]
125899832 (col18a1a)
00535 Proteoglycans [BR:
efo00535
]
125899832 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125899832 (col18a1a)
Exosome [BR:
efo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125899832 (col18a1a)
Proteoglycans [BR:
efo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
125899832 (col18a1a)
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125899832 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
125899832
NCBI-ProteinID:
XP_049450359
LinkDB
All DBs
Position
LG13:complement(9210238..9310370)
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AA seq
1436 aa
AA seq
DB search
MPKMRTHFGVLFLLTLWVVYSDAWFWAWSGTTTLPPTVDHEGSGSPAGSGEPPSENIARV
GEEIIDEGHGIPKVVQTEGPRQTTLIPTTQPETARISSRIREPGNGTSSLEEDSGVSLLQ
LIGDPPPNTITQVFGSDNSPGYVFGPDANTGQLARAHLPSPFYRDFALIFNLKPTTDRGG
VIFSITDAAQQIMYVGVKLSAVQGSNQNVILYYTEPDSQQSYEAARFPVPSMRDTWTRFA
IAVRDDKVMFYLNCDIDPQVMRIERSPDEMELESGAGVFVGQAGGADTEKFLGVIGELRV
VGDPRAAERHCEEDEDDSDMASGEGSGYVESRPPKPDMERHRWTTTPPSSRPIQQPPLTR
KDELLIARETGAVGAKGEKGDRGDTGMKGDRGPIGPKGEAGSGSSSRGGARGEKGEPGEK
GAKGSAGFGYQGKKGDTGPPGPAGPPGPPGPATEFSVGSDGSVASRVPGPRGPAGPKGVP
GPQGPPGTDGEPGDPGEDGKTGPEGPPGFPGTPGDPGLKGEKGDRGEGQPGPRGPPGPPG
PPGPGLRSTFVDMEGSGFPDLESVRGPPGPPGPPGLPGPPGLSTGGAATSSGAFGPPGKD
GAPGQPGLPGLPGTDGLPGAAGPKGEKGDSGELGLPGAVGEKGSRGDPGLPGAPGQPGLA
GLPGPIGPIGPPGPPGPPGPSYRVGFDDMEGSGGGFSNGVPGVRGPEGRQGPPGLPGLPG
KAGLPGIPGQKGMDGLAGTDGRPGLDGFPGPQGPKGDSGIKGERGDPGRDGTGLPGPPGP
PGPPGQIIYRTSGDFDGVVGGAGPQGGPGLPGQAGFPGPIGPKGDRGDPGLPGYGVKGEK
GEPGLVIGPDGNLLHLEGLTGLKGDRGPAGPVGPPGQYGPPGIKGEIGMPGRPGRPGVNG
YKGEKGDPGTGSGYGYPGVPGQPGPPGPPGPPGPVLSLDRFNRYDESSRNYLEHKGEKGE
RGERGLPGIPGTASNFDIYAFKNELKGERGEVGVKGEKGEPGGGYYDPRFGGVQGPPGSP
GRPGLPGPKGESVMGPPGPQGPPGPPGIGYDGRPGPPGPPGPPGPQGSSSLPGPYRPNHS
VTVPGPPGPPGPPGSPGHSSGVTVLRSYDTMLATARRQAEGSLIYIIDKADLYLRVRDGL
RQVMLGEYSPFFRDLENEVAEVQPPPVILYPQSQDQSQNNGAGHYSQGGTAIRPIEPPPQ
PPVDPRYPPQYDPRFPEPRHTGQTDGRLATHHTDNRYPVTPQRRPSPPVPQPAGHVPSAS
GLHLIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRDS
FPIVNLKDQVLFSSWESIFGDDASKMKENVPIYSFDGRDILRDSAWPEKMIWHGSSNKGH
RQTDHYCETWRAGDHAVTGLASSLQSGHLLQQSSSSCSGSYIVLCIENAFTSHSKK
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaatgaggacccactttggagttttgtttttgttgaccctatgggtggtctac
tctgatgcttggttctgggcctggagtggtactacaactttgcccccaacagtggaccat
gaggggtctggcagtccagcaggtagtggagaaccaccatcagagaatattgcaagggtt
ggagaggagatcattgatgagggacatgggatcccaaaggttgtgcagactgagggacca
cgacagaccactctaatacctacaacacaaccggagacagcacggatttcatcacgcata
cgtgaacctggtaatggcacatcttctctagaggaagacagtggagtctccctgctacag
ctgattggggatcctcctccaaacacaatcacccaggtctttgggtcagacaacagcccc
ggctatgtctttggtcctgatgccaacacgggccagctggcgcgtgcccacctgccgagc
ccattctaccgagacttcgccctcatcttcaacctgaaacccaccacagacaggggtggt
gtcatcttctccatcacagatgctgctcagcagatcatgtatgtgggtgttaaactgtcc
gctgtgcagggcagcaaccagaatgtcatcctgtactacactgagcccgactcgcagcag
tcgtatgaggcggccaggttccctgtgccctccatgagggatacctggactcgttttgct
attgctgtgagggatgacaaagtgatgttctacctcaactgtgacatagaccctcaggtg
atgcgcattgagaggtccccggacgagatggagctggagtctggtgctggggtctttgtt
gggcaagctggaggagctgatacagagaagtttctgggggtgatcggtgagctgagggtg
gtgggagacccccgtgctgctgagaggcactgtgaagaggatgaagatgactcagacatg
gcttcaggtgaaggaagtggctatgtggagtccagacccccaaaaccagacatggagaga
cacagatggacgacgactcctccatcttccaggcccattcagcagccaccactgaccagg
aaagatgagctgttaattgcaagagaaacaggggcagttggggcgaaaggagaaaagggt
gaccgaggggatacaggaatgaaaggagacaggggtccaattgggccgaagggagaggct
ggctctggctccagctcacggggtggagcccgtggagagaagggagaaccaggggaaaag
ggagcaaagggcagtgcaggctttggctaccaaggaaagaagggagacaccggcccacct
gggcccgccggtccccctggccctccagggcccgcaaccgagttttcagtcggcagtgac
ggctcagtcgcctccagagtccctggaccccgaggaccagctgggccaaaaggtgtcccg
ggcccccagggaccaccaggaactgatggagagccaggcgaccctggtgaggatggaaaa
actggtcctgaaggacctccaggtttcccaggaacccctggtgacccaggactgaaagga
gaaaagggagaccgtggagagggtcaacctggccccaggggacctccaggacccccggga
cccccaggaccaggactcagatctacttttgtggacatggaaggctcagggttccctgat
ctggaatctgtgcggggaccacctggcccaccaggtcccccaggtctccctggtcctcct
ggtctctctacaggaggagcagcaacgagttctggggcgttcggaccaccaggaaaggac
ggggcacccggtcaacctggcttgcctggtttgccgggtactgatggcctcccaggagct
gctggtccaaagggagaaaagggtgattcaggtgagctgggtcttccaggagcagttggg
gagaagggatctcgaggagaccctggtttacctggagctccaggacagcccggactggct
ggtctgcctggacccattggaccaattggacctcctgggcctcctggacctcctggccca
agttatcgtgttggatttgatgacatggaaggctctggtggaggtttcagcaatggagtt
cctggtgtcagaggaccagaaggaagacagggtcctcctggcttgcccggacttccaggt
aaagccgggctgcctggtataccaggtcagaagggcatggacggtcttgcaggaacagat
ggacgaccgggattggatggcttccctggacctcagggaccaaagggtgacagtggcatc
aaaggagagaggggtgacccaggtcgggatggaaccggactaccaggcccacccggccct
cctggaccgccaggacaaatcatctaccggacatctggcgattttgatggtgttgttggc
ggtgctgggcctcagggaggacctggtctacctggtcaagctggattccctggtcctata
ggaccaaagggtgacagaggagaccccggccttccaggctacggagtgaagggtgagaaa
ggtgaaccaggcttagtaatcggacctgatggaaatcttctgcatctggaaggactaacg
ggtctgaagggagacagaggacccgctggacctgtcggaccccctggtcagtatgggcct
cctggaataaagggtgaaattggaatgcctggaagacctggtcgccctggtgtaaatggg
tacaagggtgagaaaggagacccaggaactggttcaggttatggctacccaggagtccca
ggccaaccaggaccacccggaccacctggacctcctgggccagtcttgtctttagatcgc
ttcaatcgctatgatgaatcttcaaggaattacctagaacataaaggggaaaaaggagag
cgtggtgagcgtggacttccaggaatcccaggaacagcctctaattttgatatttacgca
ttcaagaatgaactgaagggagaacgtggggaagtaggtgtgaagggagaaaagggagag
cctggtggtggatattatgacccacgctttggaggagtacaaggcccaccagggtctcct
ggcagaccaggcctaccgggtccaaagggagaaagtgtaatgggcccccccggaccgcaa
gggccaccagggcctccagggattggttatgatgggcgtccaggccctccaggaccacct
ggacctccaggaccccaaggatcttcctcacttccaggaccatataggcccaatcactct
gtcactgttcctggaccgcctggtcctcctggtccacctggaagtcctggtcactcctca
ggggttacagttctgaggtcgtacgacacaatgttagcgactgccagacgccaggctgag
ggcagcctcatctacatcattgacaaagcagacctctatttgagagtacgcgatggactg
cggcaagtcatgcttggagagtacagtcccttcttcagagatctggagaatgaggtggca
gaggtccagcctccaccagtgatcctgtacccccagtcccaggaccagtcccaaaacaac
ggcgctggccattactcacagggtggtactgccatacggcccatcgagcctccaccgcaa
ccacctgtagaccccagataccccccacagtatgatcccagattcccagaaccgagacac
actggtcagacagatgggagattagccacccaccatactgacaacagataccccgtaact
ccacagcgacgacccagcccacctgtgccgcagcctgctggccacgtgccatcagcatca
ggactacatctcatcgccctgaacgcccctcaaactggtaacatgcgaggaatccgcgga
gcagacttcctgtgcttccagcaggcccgtgctgtgggcctgaagggcaccttcagagct
ttcctgtcctccaagcttcaagacctttacaccatcgtccgcaggtcggacagggacagc
ttccccatcgtgaacctcaaggaccaagtgttgttcagcagttgggagtctatctttgga
gacgatgcaagtaaaatgaaggagaatgtaccgatttactccttcgatggcagagacatc
ctcagggacagtgcatggccagaaaaaatgatctggcatggatcaagcaacaaaggccac
cggcaaacagaccattactgcgaaacatggcgggcgggtgaccatgctgtgactggtctg
gcatcatcgctacagagcggccacctcctgcagcaatcctccagtagctgttccggctcc
tacatcgtcctctgcatcgagaacgccttcacatcacactccaaaaaataa
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