KEGG   Epinephelus fuscoguttatus (brown-marbled grouper): 125900005
Entry
125900005         CDS       T08419                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
efo  Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04382  Cornified envelope formation
efo04510  Focal adhesion
efo04512  ECM-receptor interaction
efo04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:efo00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    125900005 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    125900005 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    125900005 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    125900005 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:efo04147]
    125900005 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:efo00536]
    125900005 (col4a2)
Exosome [BR:efo04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   125900005 (col4a2)
Glycosaminoglycan binding proteins [BR:efo00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   125900005 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 125900005
NCBI-ProteinID: XP_049450691
LinkDB
Position
LG13:26353173..26446197
AA seq 1677 aa
MSRTMQGQHNRGLKDLRLLLLFLSIAILASAVHAGGKKHTGPCAGRDCSGGCKCFPEKGA
RGHPGPLGPQGPQGPPGKPGDMGIEGPKGQKGDRGRSGFIGPKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTQGESGLPGQPGANGAPGFPGQAGWKGQKGDPLDVIVYMQ
RFRGDPGTPGVNGIFGPPGTPGWQGNRGIPGPKGPPGPPGPRGPKGTMTKVLKGHKGDQG
DIGPQGPPGNSTHQQILPPYGPTGPRGEKGLKGEIGDPGFLEGGKGEAGVIGFPGNRGEP
GADGRPGPKGDFGDPGPKGRDGPKGVRGEAGELISSGSLPWSGGPPGPPGEQGPQGERGP
VGDQGFQGPPGQSAYDTQQQVWDFFGPFGFKGEPGEKGQPGEPGRPADIAGPPGTNGRPG
SMGPPGPKGTWAEFFKGAPGGRGRPGNAGYKGIKGDHGLCECTIMHSLPGLPGPAGKQGD
AGMTGEFGQEGDEGDTGPRGVDGFPGPPGISGAPGPKGRKGAARAASQKGYPGDQGDHGR
DGGSGAPGAPGRNGLPGPPGSRGLPGEGPRGEPGDKGYPGQRGRPGEPGLRGIDGEVLGG
VKGQRGLPGDDGHAGYDGVPGTPGSPGGCSPTGSGGQVDVTGPCDAVPGPPGLPGSPGPP
GLPGVPGPAGLKGPQGPYGAVGEKGETGDQGIGGRPGPPGFAGPRGDLGFPGAKGSVGGP
GVTGLPGRHGPQGQKGFHGEILGASPGPPGDIGLPGLQGNKGQTGDPGDQGYPGMPGMPG
MIGFKGESGPLGLRGEEGWPGPAGKYGFPGDPGQAGPPGPRGGIGQPGLTGERGVEGDPG
PPGPIGLKGVPGLYGSVGPTGDYGPSGEPGQTGVDGRPGLGGMKGYKGSPGMSGFEGNRG
NQGAKGFSGSGGEPGLPGQAGLKGVTGRNGEKGDRGDRGLPGEKPYIPHHMIIDMKGAKG
DYGNYGNQGFTGPRGNKGMPGVPGLEGRHGLPGDPSPVKGVHGDPGAEGLQGIKGMPGLT
GNRGIAGFEGMSGNRGIKGSPGAYGASGDKGRKGPKGEGGQRIDLPGATGLRGEEGLPGE
PGLKGFIGPTGERGTPGFDGIEGRKGESGDPGISGFTGPDGQKGTPGTQGQKGFPGFPGK
DGHPGIPGFPGNKGFPGLKGLYGLHGLKGQKGNTGTPGFDVTGPAGEPGPKGQRGEDGDP
NNQPGFPGTVGLKGFQGPEGDHGRPGPPGFRGPVGPSGTPDKPGLSGDPGFTGPKGNQGF
PGPRGFPGVDALPGEKGVPGFNGYPGVAGRKGFNGDQGPFGYRGPNGVSGKKGVKGEQGV
MGVPGVIGLKGERGSPGPKGNTGPPGFRGFPGSQGPLPIPISIPGERGPAGPRGIQGPKG
VIGEPGPQGPPGAPGFMGPIGHKGMPGISGRPGTPGFPGDPGQMGHPGLQGMEGRRGHTG
IPGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLA
GSCLPRFSTMPFLYCNPGDLCYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCE
APSVAIAIHSQDITIPQCPVGWRSLWIGYSFIMHTAAGNEGGGQSLSSPGSCLEDFRTTP
FIECNGAKGTCHYFANKHSFWLTSIDQSFHTEPAAETLKAGQLLSRISRCQVCMKNL
NT seq 5034 nt   +upstreamnt  +downstreamnt
atgagtcggaccatgcaaggacaacacaacagaggactgaaggatctgaggctgctgctt
ctgttcctctccattgccatcctcgcctcagcagtgcacgcgggtgggaagaagcacacc
ggcccctgtgcaggaagagactgcagcggaggctgtaaatgtttcccagagaagggtgcc
aggggtcatcctgggcctcttgggcctcagggcccccaagggcctccagggaagccaggt
gatatgggcatcgagggaccaaaggggcagaaaggtgaccgtggccgcagtggtttcata
ggtcccaaaggaaatgtgggaatgactggcgttcctgggttttctggaaacgatggcatt
cctggccacccaggacaggctgggcccagggggaagccaggtgctgacggctgcaacggg
acacagggagaatcagggttaccagggcaacccggtgcaaacggtgcaccaggttttcct
ggacaagcgggctggaagggacagaagggagaccctctggacgtcattgtgtacatgcag
cgcttcaggggagatccaggcacgccaggggtcaacggaatatttgggcctccaggaact
ccaggatggcagggtaacagaggcatcccaggaccgaagggtcccccagggcctccaggt
ccccgtggaccaaagggcacgatgaccaaagtgcttaagggacacaaaggagaccaaggg
gacatcggaccgcaagggccaccaggaaactctactcatcagcagattctgcccccctac
ggacccacaggacctcgtggagagaaaggtctgaaaggagaaataggagatccgggtttt
cttgagggtggcaaaggagaagcaggtgtgataggattccctggaaaccggggtgaacct
ggtgcagatggacgtcctggaccgaagggggatttcggtgacccaggaccaaaaggcaga
gatggtcctaagggggtcagaggtgaagcgggagaactgatttcatcaggatcattgcct
tggtcaggtggtcctcccggtcctcctggtgagcagggtccacagggagagaggggcccg
gttggagaccaaggcttccaaggacccccaggacaatccgcctatgacacacagcaacaa
gtgtgggatttcttcgggccatttggtttcaagggggagccgggagagaagggccagcct
ggggaaccaggacgccctgctgacattgcaggacccccaggcaccaacgggcgcccaggg
tctatggggcctccaggacccaagggaacatgggctgagttctttaaaggggcgcctggt
gggagaggaaggcccggcaatgcaggctataaaggaataaaaggtgaccatggactgtgt
gaatgcaccatcatgcactctttaccggggctacctggccctgctggtaagcaaggtgat
gctgggatgaccggtgagtttggtcaggagggtgatgaaggagacacaggtccccgcgga
gtcgacggattccctggacctcctggcatcagcggtgcgccaggcccaaaaggtcgtaaa
ggggcagcgagagcggcctcacagaaaggatatcctggagaccaaggtgatcacggacga
gatggtgggtcaggtgcgccaggtgctcctggacgaaatggtttgcccggtccccctggg
agccgaggtcttccaggagaaggtcccagaggagaacccggagacaaaggttacccaggt
cagcgtggtcgtcccggtgaacccgggctacgtggaattgatggtgaagtccttgggggc
gtcaagggccagcgtggtttacctggtgacgacggccacgcaggctatgatggagttcca
ggaacacctggcagcccaggcggctgtagtccgacaggaagtggaggacaggtggatgta
acaggtccttgtgatgctgtaccaggacctcctgggctgcctggatctccaggaccccct
ggattgccaggtgtcccaggtcctgcgggcttaaagggaccacagggtccatatggagca
gtcggagagaaaggagaaacaggagatcaggggataggcggtcgtcctggaccaccaggt
tttgccggcccccgtggagacttgggatttcctggcgctaaaggttcagtaggaggccct
ggtgttactggtctgcctggccggcatgggccgcaaggtcaaaaaggttttcatggagag
atcttgggagcatcgcctggaccccctggtgacatagggctgcctgggcttcaagggaat
aaaggccagactggagatccaggcgatcaaggctatccagggatgccgggcatgcctggt
atgatcggcttcaagggtgagagtggccctcttggcctgcgaggggaggaaggatggcct
gggccagcgggcaagtatggcttccctggtgatcctggccaagcgggaccacctgggcct
cgtggtggtattggacagccaggtttaactggggagaggggagttgaaggagacccaggt
cctccaggtccaataggattaaaaggtgtcccaggactgtacggtagtgttggtcccact
ggagattacggcccatcaggtgaaccaggacagacaggtgtagatggacgtccaggactt
ggaggaatgaagggatacaaagggtctccaggcatgtcaggttttgaggggaacaggggt
aatcaaggtgcaaagggcttcagcgggtctggtggagaacctggactgccaggccaagct
ggcctaaaaggagtgactggtcgaaacggagagaaaggtgatcgtggtgatagaggacta
cctggggagaagccttacataccccaccacatgattattgacatgaagggagccaaggga
gactatgggaattatggaaatcaaggtttcaccggaccaagagggaataagggtatgcct
ggtgtgccgggcttggagggaagacatggtcttcctggagaccccagccctgtgaaaggt
gtccatggagatcctggtgcagaggggcttcagggaataaaaggaatgccaggcctcaca
ggaaatcgaggaattgctggttttgagggaatgtcaggcaacaggggaattaaaggcagt
cctggtgcctatggtgcatcaggagacaaaggaaggaagggccccaaaggtgagggaggc
caacgcatagaccttccaggagccaccggattgagaggagaggaaggtttaccaggagaa
ccaggcctgaaaggattcattggcccaacaggagaaaggggtacacctggttttgatggg
attgaagggagaaagggagagtcaggtgatccaggaatatcaggattcacaggccctgat
gggcagaaggggacacccggtacccagggtcaaaaaggctttcctggatttcctggaaaa
gacggacatccaggtattcctggcttccctggaaacaaaggtttccccggcctgaaaggt
ctttatggattacatggactgaaaggacaaaagggcaacacgggaacaccaggtttcgat
gtcactggaccagctggagagccgggacctaaaggacagaggggagaggacggtgacccc
aacaaccagccaggttttcctggcacagtcggtttgaaaggcttccagggacctgaaggt
gaccatggtcgacctggaccgcctggattccgtggccctgtaggaccaagtgggacccct
gacaaaccaggattaagtggggatcctggcttcacagggcctaaagggaaccaaggtttc
cctggacccagaggattccctggtgtggatgccctccctggagaaaagggtgtaccagga
tttaatgggtatcctggagtcgctggtaggaaaggattcaatggggatcaaggtccattc
ggatacagggggccaaacggtgtttctgggaagaaaggagtgaaaggagagcaaggagtg
atgggagttcctggtgttatcggtctgaagggagaaagagggtcacctggtccaaaagga
aacactggacctccaggtttccgagggttcccaggaagccagggtcctcttccaattccc
atcagcattccaggagagagaggccctgcaggaccgcggggtatccaaggaccaaagggg
gtcataggggaaccagggccacagggcccccctggtgctccaggtttcatgggacccatt
gggcacaagggcatgcctgggattagtggtagaccaggaacgcctggatttcctggagac
cctggacaaatgggccaccctggtctgcaaggcatggaaggtcgccgtggccacactggt
atccctgggttacctggtatgccgggccgcagtgtcagtgtgggttacctgctggtgaaa
cacagtcagtcagagcagacgcccatgtgtcctgtgggcatgtccaaactgtgggacggc
tacagtctgctgtacttcgagggccaggaaaaggcccacaaccaggatcttggtttggcg
ggctcctgcctcccacgattcagcaccatgcccttcctgtactgcaaccccggagacctt
tgttactacgccagcagaaatgacaaatcctactggctgtcgacgactgctcctcttccc
atgatgcctgtagaagaaggagagatcaaaccatacatcagccgctgctctgtatgcgaa
gctccatcagttgccatcgcaatccacagccaggacattaccatcccacagtgtcctgtg
ggctggcgcagcctgtggattggctactccttcatcatgcacacagcggcaggaaatgaa
ggcggaggtcagtccttgtcgtcgcccggctcctgcctggaggacttccgcacaacacca
ttcatcgagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagcttc
tggctcacctccatagatcagtcgttccacactgagccggcagcagagacgctcaaagca
ggccagctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga

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