Epinephelus fuscoguttatus (brown-marbled grouper): 125901300
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Entry
125901300 CDS
T08419
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125901300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125901300
03019 Messenger RNA biogenesis [BR:
efo03019
]
125901300
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125901300
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125901300
U7-dependent histone pre-mRNA processing factors
125901300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
125901300
NCBI-ProteinID:
XP_049452901
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Position
LG14:20719259..20726747
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AA seq
690 aa
AA seq
DB search
MATKRKVEVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLRIFKNITLIHEVGMVLLEWLANPLNDMYADAVTTVVLEVQSNPKA
QKAMETQSVIMDMDVFQTRLAVMLQDMFGEECVDFSDGKSISVTVDGKTVLICLQTRSVC
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaacgcaaagtagaggtgattgtccccgcagaggagagtgaccagctgctt
atccgtccactgggtgctggtcaggaggttgggaggtcatgcattatcctggagttcaaa
ggaaggaaaattatgctggactgtggtatccaccctggtttggagggaatggatgctctc
ccctacatagacttgatcgacccagctgagatagacctgctgctcatcagccatttccac
ttggatcactgtggagctctgccctggttcctccagaagaccagctttaaaggcaggacc
ttcatgacccacgccaccaaggccatctaccgctggctactgtcagactacgtcaaagtc
agcaacatttctgcagatgacatgctgtacactgagactgatctggaggagagcatggat
aagattgagaccatcaacttccacgaggtgaaggaggtggctggaatcaagttctggtgc
tatcacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtcaag
ctgctgtacacgggagacttctcccgacaggaagacagacatctgatggcagctgagatc
ccaagtgtcaaacctgacatcttaatcatagagtcgacctacggcacccacatccatgag
aagagggaggagcgcgaagctcggttctgcaacacagtccatgacattgttaacagagag
ggtcgctgtttaatccctgtgtttgccctggggcgcgcccaggaactgctgctcatcctg
gacgagtactggcagaaccacccagagctccatgacatccccatctactacgcttcatcc
ctggccaagaagtgcatggctgtgtaccagacctacgtcaacgcaatgaacgacaagatc
cgcaaggcgatcaacatcaacaacccttttgtcttcaaacacatcagcaacctcaagagc
atggatcactttgatgacatcggtcccagtgtggtgatggcgtctccaggtatgatgcag
agcgggctgtccagagagctcttcgagagctggtgcaccgataagaggaacggagtcatc
atcgctggatactgtgtggagggcacactagccaagcacatcatgtctgagccggaggag
atcaccaccatgtcagggcagaagctgcagctgaagatgtcagtggactacatctctttc
tctgcccacactgactaccagcagaccagcgagttcatcagagccctcaaaccgcctcat
gtgatcctggttcacggggagcagaatgagatggcgcgtctgaaggctgcgctgatcagg
gagtacgaggataacgaccaggttcacatcgaagtccacaaccctcgcaacacagaggct
gtcaccctcaacttcaggggagagaaactggccaaggtgatgggctctctggctgataag
aagtgtgcgcagggccagagggtgtcaggcatactggtgaaaaagaacttcaactaccac
atccttaatccctccgacctttctacatacacagagctggctatgagcacagtgaaacag
acccaggccatccccttcactggaccttactcactgcttgtctgccatctgaggaacctc
accggtgacgtggaggagcttgacggaaccgagaagaacaccttgaggatttttaaaaac
atcactctgatccacgaggttggcatggtgctgctggagtggctagcaaaccctctcaat
gacatgtacgccgacgccgtcaccactgtagtgctcgaggtccagtcaaacccaaaagcg
cagaaagccatggagacccagagtgtcatcatggacatggacgtcttccaaacccgactg
gcagtcatgttacaggacatgtttggggaggaatgtgtggatttcagtgatggtaaaagc
atctctgtgaccgtagatggaaagacagttctcatctgcttgcaaacaagatcggtgtgc
tacgaggatgaatgcacagaagacgactctctgagggagatggtggagctggcagtgcag
cggctctacgacgccctcaacccagttatctga
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