Epinephelus fuscoguttatus (brown-marbled grouper): 125902338
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Entry
125902338 CDS
T08419
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03030
DNA replication
efo03410
Base excision repair
efo03420
Nucleotide excision repair
efo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125902338 (lig1)
03410 Base excision repair
125902338 (lig1)
03420 Nucleotide excision repair
125902338 (lig1)
03430 Mismatch repair
125902338 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efo03032
]
125902338 (lig1)
03400 DNA repair and recombination proteins [BR:
efo03400
]
125902338 (lig1)
Enzymes [BR:
efo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125902338 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
125902338 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
125902338 (lig1)
DNA replication proteins [BR:
efo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
125902338 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
125902338 (lig1)
DNA repair and recombination proteins [BR:
efo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
125902338 (lig1)
NER (nucleotide excision repair)
Other NER factors
125902338 (lig1)
MMR (mismatch excision repair)
Other MMR factors
125902338 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
125902338
NCBI-ProteinID:
XP_049454555
LinkDB
All DBs
Position
LG15:14399634..14456943
Genome browser
AA seq
1020 aa
AA seq
DB search
MQRSIASFFQPKCKDKDVQKKSADEPLKKPVKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDDEEAPVVKEQILTKGQGDKEAHGKIEKKDDVFKAVPTPMSPPSAPATPVTPATPATPA
TPASSASPGTPGTPNSISPSGIVKRKTARKMFPKRKLDESRSGSESQKDESEAKEEQGQQ
NKRPRVESSASSAGNTVEPMEEGAKEERVEKAVTEADSPDEEVEEEKKKGEEEKAEEEEQ
VKRKSPDEKEKKAEGAEKKNEAKEKTDDEKGPAVARKKEAVVEKDTREGEESPKSQTARK
QKEAKEQKDKEPPKKAPISSFFAPRKAAVKTDKPEKNEGEKKTSAERKTSTEESRDTKGE
STSGQTTTDYDPSRPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLL
RSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEK
GDLGLVAESSRSNQRTMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRF
SEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSTESRRAWI
EEKSLILKQTYCEMPNYDVLIPVLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMK
KFDEAAFTCEYKYDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSC
VLDSEAVAWDSEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLC
RRRALLKESFSEVEGEFVFARSIDSDNTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIA
KRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDDENEEFQSVCKI
GTGFKDEDLEQHYKFLKEHILPKPRAYYRHDQSAEPDVWLDAIQVWEVKCADLSLSPVYK
AAMGMVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEEYY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttttttcagcccaagtgcaaggacaaggatgttcagaag
aaatcagcagatgaaccgctgaaaaagcctgtcaaaagccccctcaaggtgcagaacggt
gtccaggaggctgattcgcccatcaagaaggttgccaaacgcagccgtcagatcctggac
agcgacgatgaggaggctccggtcgtcaaagagcaaattcttaccaagggacaaggagac
aaagaagcgcatggtaaaatagaaaagaaggatgatgtcttcaaggcagttccaacccct
atgtctcctccatcggccccagccacccctgtgacccccgccactccagccactccggcc
accccggcctcttcagcttcacctggtacccccggcacaccaaactccatctccccctct
gggattgttaagcgcaagactgcgaggaagatgttccctaagaggaagcttgatgagagc
aggagcggcagcgagagtcagaaagacgagtccgaggccaaggaggagcagggtcagcaa
aacaaacgaccccgtgtggagagcagcgccagcagcgcagggaacaccgttgaacccatg
gaggagggagcaaaggaagaaagggttgaaaaggcagtgaccgaggctgacagccctgat
gaggaggtggaggaggagaagaagaaaggggaagaagagaaggctgaggaggaggagcag
gtgaagagaaagagccctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaat
gaagcaaaggagaagacggatgatgagaaagggcccgctgttgccaggaaaaaggaggcg
gtggttgaaaaggacacacgagagggagaagagagcccaaaaagtcaaacggcgagaaag
cagaaagaagcaaaagagcagaaagataaggagccgcccaagaaagcccccatcagcagt
ttctttgctcccagaaaagctgcagtgaagacggacaaaccagagaagaatgagggggag
aaaaagacgagtgcagagaggaagacttcaacagaagagagcagagacacaaaaggtgag
tcaacctcgggacaaacgacgacagactacgatccgtccaggccgaactatcatcctgtg
gaccatgcctgctggaagcaaggccaaaaagtgccgtacttggcggtggctcgcaccttt
gagaagattgaagaggactctggcaggctgagaaacattgagacgctgtcgaacctgctc
cgctccgtgctgctgctctctccagacgacctgttgtgctgtgtgtacctgtgtttgaac
cagctgggtcctgcctacctggggatggagctcggtgttggagaaacggtgctgatgaaa
gctgttgctcaagcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaa
ggagatttgggcctcgtggccgagagttcccgtagcaaccagcgcacaatgttccagccg
gccagtctgacagcagggggcgtgttcaggaaattgaaggaaatcgccagcatgagtggg
aactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttt
tccgaggcccgctacatagtcaggtccctggctggtaagctgaggatcggcctggctgag
cagagtgtcctatcagcgctaagccaggctgtgtgtctgaccccccctggacaaggtttc
cctcccgctgtgatcgacgcagggaaggggatgagcactgagagcaggcgggcgtggatc
gaagagaagagtctcattctcaaacagacttactgcgagatgcccaattatgacgtcctt
atacccgttctgctgaaagaaggcatagacgagctgcccaatcactgcaagctcactcca
ggtgtaccgctgagacccatgttggctcaccccaccaagggtgtcggcgaggtgatgaag
aaatttgacgaggcggcgttcacctgcgagtacaaatacgacggagagcgtgcacagatt
cacattctcgagaatggcgaggttcgaatattcagccgcaaccaggaagacaacaccagc
aaataccccgatatcatctctcgcattcccaaggtgaagaaggattctgtggtatcctgc
gtcctggactctgaggctgtggcctgggatagtgagaagaaacagatccagcccttccag
gtccttaccacccgtaagagaaaggacgtggatgcttcggagatcaaagtccaagtgtgc
gtgtacgcctttgacctcctctatctcaatggagagtccctggtgcgacagccgttgtgt
cggcgtcgggctctgctgaaagaaagcttctcagaggtggagggggagtttgtgttcgcc
cgatccatcgactccgacaacaccgacgccatcgccgagttcctggagcagtctgtccga
gactcctgcgagggcctcatggtgaagactctggagaaggatgccacctatgaaattgcc
aagcgctctcacaactggctcaagctaaagaaggactacctggatggggtgggtgacacg
gtggacctgtgcgtgattggtgcctacctgggaaaaggcaagaggacaggcacctatggg
ggcttcctgctggcctgctatgacgacgagaacgaggagttccagtccgtctgcaagatc
gggacaggcttcaaggatgaagatctggagcagcattacaagttcttaaaggagcatatt
ctgcccaagccccgcgcctactaccgccacgaccaatcagcagagcccgacgtatggctg
gacgccatacaagtctgggaggtgaagtgcgctgacctgtcactgtcacccgtctacaag
gctgctatgggaatggtggatccagaaaaaggcatttctctgaggttcccccgcttcctt
cggatcagagacgacaagaagcctgaggacgccacgactggagctcagattgcggatttg
tacaagaagcagcagcagattcagaatcagggggagaaagctgacccggaggagtattac
tga
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