Epinephelus fuscoguttatus (brown-marbled grouper): 125904181
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Entry
125904181 CDS
T08419
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04510
Focal adhesion
efo04512
ECM-receptor interaction
efo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125904181 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125904181 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125904181 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125904181 (col1a2)
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125904181 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
125904181
NCBI-ProteinID:
XP_049457372
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All DBs
Position
LG17:complement(28571030..28588878)
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AA seq
1146 aa
AA seq
DB search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NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgggtatgatgggcgctagaggccctcctggacctcctggaccccctggtgctcagggc
cacaccggacaccctggtgagcccggagagcctggacagactggccccgtcggtccccgt
ggcccccctggaccccctggcaaatctggagaggacggtaacaacggcagacctggaaag
cccggagacagaggtgcccccggcccacagggcgctcgtggattccccggaacccctgga
cttccaggaatgaagggacacagaggttacactggtctggatggacgcaagggagagcct
ggtggtgctggacccaagggtgagcctggtgcacacggagctgctggaagtcccggactt
gctggatctcgtggtttgcctggtgagagaggccgtgctggccctgctggccctgctggt
gctcgtggtgctgatggcaatgttggacccgccggtcctgctggtcctcttggagctgct
ggtcccccaggtttccccggtggccccggacccaagggagagattggacctgctggagct
actggcccaactggagctcagggagctagaggagagcccggtcccaatggcgctgttgga
cccgtcggtccccctggtaaccctggtaataatggtctgaacggagccaagggagccgct
ggcgcccctggtgttgctggcgctcctggcttccctggaccaagaggaggacctggacct
cagggccctcagggtgctgctggacagagaggcctcgctggagatcctggtacccagggt
gttaagggagatggtggacccaagggagagcctggtaactctggacctcagggaccccct
ggacctcagggtgaggagggtaagagaggacccactggtgagcttggtgccactggacct
gctggaaaccgtggagctagaggtgcccctggcagccgtggtatgcctggtagcgaggga
agaactggtcctattggcatgcctggtgcccgtggtgccactggtgctgctggacctcgt
ggaccccctggagatgctggccgtgccggtgaatctggcccagctggtctcaggggtctc
ccaggaagccctggaagctccggacccccaggaaaggagggacctgctggccccgctgga
caagatggccgtggtggaccccctggcccaactggacctagaggccagcccggaaacatt
ggattccccggacccaaaggacctggtggtgaggctggcaagcctggagacaagggagcc
actggccccactggactgagaggaccccctggacctgatggcaacaatggagccactggt
gctactggacctgctggcggtcctggtgagaagggagaggcgggggctgctggagctcct
ggcttccagggtctgcctggtcctgctggaggtgctggagaggctggcaaacccggagac
agaggtatcccaggagaccagggagtttctggacctgctggtgccaagggagagcgtgga
gaggttggacctgctggagctcctggattcgctggaccacctggcgctgatggtcagacc
ggagcaagaggagagcgtggaccttctggtggaaagggagaatctggccccgctggtcct
gctggacctgctggacagtctggacctcctggtgcttctggccctgctggacctactggt
cctcgtggagataacggccctcctggtctgactggtttccctggtgctgctggcagagtt
ggtgctgctggccctgctggtattgttggaccccctggctccgctggtcccgctggtaag
gatggacctcgtggtctccgtggtgatcctggtccttctggtccttctggagatcagggt
atggttggaccacctggcccatctggagagaagggaccttctggagagcccggtcccgct
ggtgctcctggtgctcctggaagcagcggtcctcttggacttcagggattcgttggtctg
cctggtgctagaggagatcgtggttcacctggtggtgctggtgctgtgggagagcctggt
agagttggaccctctggtcctgctggagcccgtggtgcccctggcaacattggcctgcct
ggtatgaccggaccccagggagaggctggacgtgagggtaaccctggtaatgatggcccc
cctggccgtcctggtgctcctggattcaagggagatcgtggtgagcccggacctgctggt
gccatgggacttgctggtgcccccggacctgctggacccactggagctgctggcagagct
ggaaaccgtggagagtctggccctggaggtcccgctggagctgttggccctgctggagct
agaggtgccgctggacccgctggaccccgtggtgagaagggagttgctggtgagaaggga
gaaagaggcatgaagggtctgcgtggacatgctggtctccagggaatgcccggaccttct
ggaccctccggtgacactggacctgctggacctaatggacctgctggaccaagaggacct
gctggaccccatggaccccctggtaaggacggcagagctggtagccatggaactattggc
gcccctggtgctcgtggaccccctggatacgttggacctgttggtcctcctggagctcct
ggtctgcccggacctcccggccccgctggtggtggatatgatgtctctggatatgatgag
tacagagccgatcagcctgctctgagagccaaggactacgaggtcgatgccactatcaag
tccctcaacactcagatcgagaacctgctcacccctgagggatccaggaagaaccctgcc
cgcacctgccgtgacatcaaactcagccaccccgaatggagcagcggattctactggatt
gaccccaaccagggatgcagtaatgatgccatcaaggtcttctgcgacttcagcacccgc
gagacctgcatccacgcccaccccggaagcattgcccgcaagaactggttcagaagcacc
gagggcaagaaacacgtctggttcggagagaccatcaacggtggtactgagtttacctac
aacgatgagaccatcagcccacagagcatggccacccagcttgccttcatgcgcctgctt
tccaacgaggctacccagaacatcacctaccactgcaagaacagcaatgcctacatgagt
gatgagaccggtgacctgaagagggctgtggtggtccagggctccaacgatgtggagctg
agagccgagggcaacagccgcttcaccttctccgtgctggaggacggctgcactagacac
actggtgagtggagcaagacagtcattgagtacagaacgaataaaccatctcgcctgccc
atcctcgacattgcacctttggacattggtggagctgatcaggagtttggtttggacatt
ggcccagtctgtttcaaataa
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