Epinephelus fuscoguttatus (brown-marbled grouper): 125904242
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Entry
125904242 CDS
T08419
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125904242 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efo03019
]
125904242 (skiv2l)
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125904242 (skiv2l)
Messenger RNA biogenesis [BR:
efo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125904242 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
125904242 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
125904242
NCBI-ProteinID:
XP_049457483
LinkDB
All DBs
Position
LG17:17940179..17959950
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRINVPPAGPMDLPLSLLEMGCSGRFELITHPLPDQPLPPQSTLPHGLPPTSLSLETEV
EKQFLQDAAWLPVHDTDFAFKKFLKVTQRDVNVDSLINCTPSSLHSGLSVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPGGMEELTLDQIKKKSELE
EDIDFENDLLRVPPGLKAGMDFTDKDAKIAKPEVNLMSLLSTLDDITDLQPEPEEKEEGK
ATEEAPKLPRTNSLEDLGIKDVVSSSTPSEKGKDETSKPKENPEENKKWAIPVNITSPCD
DFYKRIPNPAFKWPFELDVFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFSEWIGRIKKRH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMFLLIDASGNFLTKGYYAAVDAKKERTSKHAQ
SFGTKSTSHNTTASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTTLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQAHEKRISQLKQTLSSLPPLDTEGQLSDLLPYYHTVTELRTTTEALQRAILESVNGL
KALSVGRVMVVNNKQHLNALGVILQVSNDSVNRTFTALVICEKGNEEREGKENNSNAFPH
LYNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPRFKFDPPGQA
ISTATQELLRLAEANPSGIASLDPVNDLQLKSVDVVEGSMRLRVLQDSLREFNCIHSPTF
AEQFARVQERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDTSGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLS
VAKRIGELQRDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtgccccccgcgggccccatggacctgccgctgtccctgctggag
atgggatgctcgggcaggtttgagctcatcacacaccccttacctgaccagcctttacct
ccacagagcacgctcccacatgggcttcctcccaccagcctgagcctggagacggaagta
gagaaacagtttttacaggacgctgcatggcttcctgtacacgacacagactttgccttc
aagaagtttcttaaggtgactcagagagacgtaaatgtcgactctcttatcaactgcact
ccgtcctctcttcactccggtctgtccgttgtcagagatccaaccacagggatgctgctg
gacttcacagaggtgttactggagaatactggcctgtcagcaaagaactcgctttcatta
caacgtcagcccgggcctccgtcagagagcctccgaggcagcaacaccaactaccccttc
ctccccggaggaatggaggagctgactctggaccaaatcaagaagaaatctgagctggag
gaggacatagactttgagaatgatttactcagagtcccacctggacttaaagctgggatg
gacttcactgacaaagatgccaagatagcaaagccagaggtcaacctcatgtccctcctg
tccacactggacgacatcactgatttgcagcctgagccagaggagaaagaggagggcaaa
gcaactgaagaggctcccaaactaccgagaacaaacagccttgaagacctgggcatcaag
gatgttgtgtcatcctcgactccctcagagaaaggaaaagatgagacatcaaagccaaaa
gagaacccagaggaaaataagaaatgggccatccctgtcaacataacttcaccctgcgat
gatttctataaacgcatccccaacccagctttcaagtggccgtttgagctggacgtcttc
cagaaacaggctgtgctgaggctggaggcgcacgactctgtgtttgtggccgcgcacaca
tcagctggcaaaacagtggtggccgaatatgccatcgcgctctcacagaaacacatgaca
aggaccatctacacgtctcccatcaaagccctgtccaatcagaagttcagagacttcaaa
aacacttttggtgacgtcggactcctgacgggcgacgtccagctcagccccgaatcttct
tgtctcatcatgaccactgagattcttcgttccatgctgtacaatggctctgaggtcatc
agagacttggagtgggtgatctttgacgaggttcactacatcaacgacgcggagagaggg
gttgtgtgggaggaagtcttgattatgcttcccgatcacgtcagtatcattctcctcagc
gccacagtgcccaatgctctggagtttagcgagtggatcggtcgtataaagaagaggcac
atttacgtgatcagcacaatgaagagacctgtgcctctggagcattatctgtacactgga
aacagcaccaagactcagaaagagatgttcctactgatcgatgcttcaggaaacttcctc
actaaagggtattacgcagctgtcgatgccaagaaggagcgcaccagcaaacacgcccag
tcatttggcacaaaaagcacttctcacaacactacagccagtcaggaccgatcggtgtgg
ctcactctcctgcacttcctgtcccaacggcagcagacaccagtggttgcgttcaccttt
tctcgtacacgctgtgacgacaatgcccgctcgctggactccatggacatgaccacctcc
atagagaaggccgagatccactctttcttccagaagagcctgagtcgactccgaggagga
gacagacagctgcctcagatcctggtcatgagggacctgttgaagagaggaatagccgtt
catcatagcgggatcctgccgatactgaaggaggtcattgagatgctcttctcacgaggc
cttgtaaaggtgctgtttgccacagagacgtttgcaatgggagtgaacatgcctgccagg
accgtggtgtttgacagcatcaggaaacacgacgggaccggctttagaaatctgctgcca
ggtgagtatatccagatggcgggccgagcaggcaggagaggtctggacgccacaggcacc
gtcatcatcctgtgcaaagccggagttcacgagatggcagatctgcatgtcatgatgctg
ggtaaacccaccaccctccagtcccagttcagactgacctacacgatgatcctcaacctg
ctgcgagtggaagcgctccgcgtgaccgacatgatgaggaggagcttctctgaaagtcac
agggacactcaggcccatgagaagaggatcagccagctgaagcagacgctgtcttctctg
cctcctctggatacagagggccagctgtccgacctgttgccttactaccacactgtgact
gagctgcgaaccaccaccgaggccctccagcgcgctattctggagtccgtcaacgggctg
aaggctctttctgtgggtcgagtcatggtggtgaacaacaagcagcatctcaacgccctg
ggagttatcctacaggtttccaatgactctgtgaatcgcactttcacagctctcgtcatc
tgcgagaaaggcaatgaagaacgggaaggaaaagaaaacaacagcaacgctttccctcac
ctctacaacacggctctcttcatacctgaaggcccttgcagccacacggtgcaaaagttg
aagcttcaagacatctcagccatcacagtgaaaaccctcaaagtgattccagaccggatc
atcgacaactacaacaagaggcaacagccgcgattcaagtttgaccctcctggccaagcc
atttccacagcgacccaggagctgctgcgattggccgaagccaaccccagcggcatagca
agtcttgaccccgtcaacgacctccagctgaagagcgtggacgtggtggagggctccatg
aggctccgtgtgctgcaagacagcctcagagagttcaactgcatccactcgcccaccttt
gcagagcagtttgctcgggttcaggagaggatgagtgtgcaggaggaactggacaggctg
ctgttcctggtgtcggatcagtctctgtctctgctgcctgaataccaccagaggatcaag
gtgctgcagtccctccagtacgtcgacaccagcggggcggtccagctgaaaggccgcgtc
gcctgtcagattagcagccatgagctgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaggagagcgccgccctgctgtcctgtttggtgttcactcagaac
acacaggttgagccgcacattaccaacacgctgcaggagggcatcgatcgggtgctgtca
gtggccaagcgtatcggagagctgcagagggattgtgggataccacagacagctgaggag
tttgttggccagttcaagtttggcctgacagaggtggtgtactgctgggccagaggcatg
ccgttcgcagagatcgcccagctgaccgacgtccaggagggcacggtggtccgctgcatc
cagcgcctggatgaggtcctgaaggaggtgcgacaggccgcccgcatcgtgggagactcc
gtcctggggagcaagatggagaaggcctccctggccatccgcagggacatcgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
