Epinephelus fuscoguttatus (brown-marbled grouper): 125905552
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Entry
125905552 CDS
T08419
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efo03021
]
125905552 (taf1c)
Transcription machinery [BR:
efo03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
125905552 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
125905552
NCBI-ProteinID:
XP_049459529
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Position
LG18:36058401..36072411
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AA seq
1093 aa
AA seq
DB search
MDYQFPQQLFPSFYNCGPPDSVLKHSAGSWGCYDRVRPQGSSGPLSSWTFTSRHQARGET
WRHTEPVPLPLLSPKNSFLWPSTPPDPLDFTEHMQNFFMDHCQDAFGCMGEILSSNFDFK
DGRREKNCKDSIPMWKLKKFLDTLKFKVCPQPYSCRTLDKYSALLSDVVPSVPPELLGPL
LYEELTEQRDRMLFSEGATGGALAFVPFSQSGSDSQRGCLLYPRSQGLDCLNFHRVELQH
HRGGSSCVDASSNDPFSFQLKGPVRQISAVSLLNDCCVAVRSDHLCGVWRFTERDEPRLL
QVVNTREVATCISVSPHVLGEVLVASESGAANLWTVGRGMQKVREEDDNLYFNAKSSWRW
CEFSAHPRVMLYADRTGVELTDIRVSPASSHTLFRISSTPECRSGERLILSRYLGDVHPF
HHLITTQYSTYIMDERFPCMPMIKWDHMMQSPPMFCHTVRGSASSGSAVGGARTTKILLG
SQSSQEITLLQYSGGRVEACSSRGPPQALHRPRDSLKHLPVQIPHRLDTATNRLSSPAAG
LTCIQTRGGREAGGEECICILQLTEAGDIFYQILEPEQPDTSRPPAADDAPLPQPALREA
TTSGRKTAKQLQPHSQMVVSDTSSDEGVIGPTQAPTALRFVAETPEREQRVQDAYPDSSS
EDSESRGRARNLKHLKVIVNDDPELDQASEVDAGVEDGKVADDPGEPVSGSGSFGSSESP
TPVKLSDGALVTWKHWLQKLMHKSREKKPRPRSLQHLTVETGDLLHLSDHGARDSAEEER
VQNLRRDLRACMSKRSLLVHSATSASLGAQDVVMVPNIVYTDAWTDQISHRLTLSWQGEE
VWRAWWEDQLGLNREEKVEALRRKRRREKEAKRASGRRLELSGSFTSSVSYQSELNDFSD
STGWSSAASQGAWSDTEGKLSQVDGFLESGTPRATTPSTLQTDTPVPRLTPTPVKDKLSD
QQTPSSFRTLALTQTPKLDPTPASQRRSRRPAEDYLHSLFAPQDEPSQHDGYFLEEGSAM
HHPPPPLSLSSSQLRSSQSVSQRSLRMDPSQDSSVWTSFSQSQSLLQGSQGRRALTQGSQ
GSQPKKKKSRMGF
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggattatcagttcccacagcagctctttccctcgttttataactgcggacctccggac
tcggtcctgaagcacagcgccgggagctggggctgctacgaccgcgtcagacctcagggc
agctctggtcctctctccagctggacattcacatccagacatcaggccagaggggagacg
tggcgtcacactgagccggtaccgcttcctctcctgtccccgaaaaactctttcctctgg
ccgtcgacgcctccagatccactggacttcacagaacatatgcagaacttcttcatggac
cactgccaggacgccttcgggtgcatgggtgaaatcctgagcagcaacttcgacttcaaa
gacggaaggagagagaaaaattgcaaggattcaatccccatgtggaagctgaaaaaattc
ctcgacacgctgaagtttaaagtatgtccgcagccgtattcctgcaggacgctggacaag
tacagcgccctgctgtcggacgtggtgccctccgtgcctcctgagctgctgggtcctctg
ctgtacgaggagctgacggagcagagagaccgcatgctgttctctgaaggagccacaggg
ggcgctttggcctttgtgcccttctcacagagcggcagcgactctcagcgcggctgcctc
ctctaccccagaagccagggactggactgcctcaacttccacagagtggagctgcagcac
cacagaggaggttcttcctgtgtggacgccagcagcaatgacccgttcagcttccagctg
aaaggccccgtcagacagatcagcgccgtctctctgctcaacgactgttgtgttgcagtg
cggtcagatcacctgtgtggcgtttggaggttcactgaaagagacgaacctcgtctgctg
caagttgtcaacaccagagaggtggcgacctgtatcagcgtcagtcctcatgttttaggt
gaagttctggtggcgagtgagagcggagcggccaatctgtggactgtcggcagagggatg
cagaaggttcgagaggaagacgacaacctgtacttcaacgccaagtcgtcgtggagatgg
tgcgagttctccgcccatcccagggtgatgctgtacgcagacaggacgggggtggagctc
acagacatcagggtgagtcctgcctcgagtcacactctgtttcgtatcagcagcacccca
gagtgtcgcagtggggagagactcattctgtccagatatctaggagacgtccacccgttc
caccacctcatcaccacacagtactcgacgtacattatggatgagcgtttcccctgcatg
cccatgatcaagtgggatcacatgatgcagtcgccgcccatgttttgtcacactgttcgt
ggctctgcgtcctctggctcggcagtgggcggggctaggaccacaaagatcctgctgggg
tcccagagctctcaggaaatcacgctgctgcagtactcaggaggcagagtggaggcctgt
tccagtcgaggtcctcctcaggcgctgcacagacccagagacagtctgaaacaccttcct
gtccagatcccgcaccgcctggacaccgcaaccaacagattgtcctcacctgctgcaggt
ctgacgtgtatccagacgagaggaggaagagaggcaggtggcgaggagtgtatctgtatc
ctacagctgacggaggcgggagatattttctaccagatcctcgagcctgagcagccggac
acctcccgacctcccgctgcagacgacgcaccgctgccacagccagctctgagagaagcc
acgacttcagggagaaaaacagccaaacagcttcagccgcattctcagatggttgtatcg
gacacgtcgagcgatgagggcgtcatcgggccgactcaggctccgactgcactgaggttt
gtggctgaaacacctgagagggaacaacgagtgcaggacgcctaccctgattcttcctct
gaggactcagagtccagagggagagctcgaaacctgaagcacctgaaggtgatcgtcaac
gatgatccagagctggatcaagcgagtgaagtggacgcaggtgtggaagatggaaaggtg
gctgatgatcctggggaacctgtcagcggctctgggagttttggttcctctgagagtccg
actccagtgaagctcagcgacggcgctcttgtcacgtggaaacactggctccagaaattg
atgcacaagagtcgtgagaagaagccccgcccacgctcccttcagcacctcacagttgaa
actggagacctcctccacctgtctgaccatggagcgagagattcggcagaggaggagcgt
gtgcagaacctgaggcgtgatctgagggcgtgcatgtcaaagcgctcgctgctggttcac
agtgccacctctgcgtccctcggtgctcaggacgtggtgatggtgccaaacattgtgtat
acagacgcctggacagatcagatcagccaccgcctcaccctctcctggcagggggaggag
gtgtggcgggcgtggtgggaggaccagctggggctcaacagggaggagaaggtggaggct
ctgaggaggaagaggaggagggagaaggaggcgaagagagcctccggtcgacgcctggaa
ctgtctgggagcttcacctcgtccgtcagctaccagtcagagctgaacgacttctctgat
tcgacgggctggtcctctgcggcgagccagggggcgtggtcagacacagaaggtaagctg
tctcaggtggatggctttttggagagtgggacgccaagagccacaacaccctccaccctg
cagactgacactccagtccccagactgacccccacacctgttaaagacaaactaagcgac
cagcagactcccagcagcttccgcaccctcgctctgacccagacaccaaaacttgacccg
acaccagccagtcagaggaggagcagacgtccagctgaggactacctccactctctgttt
gcaccacaggatgagccctcgcagcatgacggttacttcctggaagagggcagcgccatg
caccatccacctccacctctgtccttgtcctcctctcagctccgcagctcccagtccgtc
tctcagaggagcctcaggatggatccgtcccaggactcctccgtctggacgagtttctcc
cagtctcagtccctcctgcagggttcacagggtcgacgggcgctgacacagggatcacag
ggatcgcagcccaagaagaagaagtcgcggatgggattttga
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