Epinephelus fuscoguttatus (brown-marbled grouper): 125905785
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Entry
125905785 CDS
T08419
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efo03041
]
125905785
Enzymes [BR:
efo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125905785
Spliceosome [BR:
efo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125905785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank_5
ATPase
Ank
Ank_4
nSTAND3
Ank_3
PhoH
AAA_22
AAA_30
TsaE
T2SSE
RNF220
Motif
Other DBs
NCBI-GeneID:
125905785
NCBI-ProteinID:
XP_049459940
LinkDB
All DBs
Position
LG18:complement(3280146..3479371)
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AA seq
1486 aa
AA seq
DB search
MKRRSCKYIMSKSGTASHKPAKSKNTPPCGSISSILKGTHIDEEVKIAVNLCLEKFRYSD
ENEMEFPSSFTSTERAFVHRLAQSLGYISKSKGKEPHRFLTIRKKNGLEKPRPTMLLTVS
HNSLYFIRSLLQRFPTNKERIDMQPYIRSGMSVAAEPDNSYDKNKASGRLNNGIPMVPRR
RNPSELDSFRCSLPVHERQEEIIQLIRENRVVLVEGETGSGKTTQIPQFLLDECSRTGEP
CRIFCTQPRRLAAIAVAERVAAERGESVGQTVGYHIRLESRVSPKTLLTFCTSGVFLRTL
MAGDSSLTTVTHVIVDEVHERDGLTDFLLTKMRDVLQKIPTLKLILSSAALDTDLFLQYF
GSCPVIHLKGRQFEVKEVFLEDILRLTGFNKDMRKFKEETQRKEKKQKCLMEWCMAVEHS
SVEEKPRTPVSAPGVLQDSSSLDRGDSTFNKLNENDTEHLEPWLRKEMDSSISSVFLSED
QVAFIQLFNLILYEGVNVDYRHSETGATPLMVAAGRGFLTQMEQLLNMGADINMKASNGW
TALDFAKHFQQTEAMDLLQSSIPLGEVSSLEESTLVQCGSAELSTEEQELLKLYHHSFDD
DRVDLDLIMDVLHNICSTTTDGAVLIFLPGYDEIVALRDRILYDDKRFSTLSERYQVFTL
HSDMQTLDQKKAMKPSPPGVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTLSRVS
MLKRVWISKASALQRKGRAGRCQSGICFHLFSRLRFNNMQEFQVPQLLRMPLQELCLQTK
LLAPSSCPVAEFLSKAPQPPAGHAIRSAVQMLKTIDAMDQYEDLTDLGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPAQGSQKKAALLCRKWFTSNTLSDHMALL
RAFQAWQKARSDGWERTFCEKNFLSQATMDMILGMRTQLLGQLRAIGFVRARGGSDIRDV
NLNSENWAVVKAALVAGMYPNLVHVNQESSLLSSNREKKVHFHPTSILTHFKENSPAQAL
PTDWLIYDEMSRGHRMATVRCCSVVTPITVAIFTGGAIQPSSALQEPAVQKAKDSLLVDT
SDSETEDLAEMRVDDWLIFQLDREAAGLVYELRQKWQSLFIKRIRCPSKPCSQQDEAILR
TLVSVLTAEEQEAGLQQPTGIGQRPRPMSSEDGSQASVKNSKHSTQLHTNTTSDRDWTTR
AFPAVHRLAARPCRMPATPNLQQKKTSSRDETSLPINQLSDDPHSSSSVTLDNPSDSPCL
SSSGKILKSLFPQWAVLSVRYFIMKSSNVRNIDISQQKGIWSTTPSNENKLTKAFMENNL
IILIFSVQGSGHFQGVATLPDWLSARPHIGPFNLTSLPCFEVLELAGQRGDFFFANTGRI
IWLTVQIIVPTDRRRHQCSSYSGYARMTSAVSQESCQDWGFMGLGGVFSVEWIHKESLPF
HCTQQILNPWNDNKKVQISRDGQELEPQAGSQLLSLWERNPRNQVK
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtcgaagctgtaagtacatcatgtcgaaatctggtacagcatcacataaacca
gccaagagcaagaacacaccaccctgtggttcaatctccagcatccttaaaggaactcac
atcgatgaagaagtcaagatagcagtgaacctctgtctggagaagtttcgctacagtgac
gaaaatgagatggaatttccctcctcctttaccagtactgagagggcttttgttcatcga
ctggcacagtccctgggttacatttctaagagcaaaggaaaagaaccacatcgtttcctc
accatcaggaagaagaatggtttagagaaacctcggccaaccatgcttctcacggtctcc
cacaattccttatatttcattcgcagcttacttcagaggtttcccaccaataaggaacgt
atagacatgcagccctacatcagaagtggtatgtctgtggctgctgaacctgataatagt
tatgacaagaacaaggcaagtgggcgcttaaacaatggcatacccatggtgcctcggagg
aggaatccgtcagaactggacagttttcgatgctctctgcctgtgcatgaacgccaggag
gagatcatccagctcatcagagaaaacagggtggtgctggtagagggagagaccggttct
ggaaaaactacacagatcccacagttcctgctagatgagtgcagcaggactggagaaccc
tgcaggatcttctgcactcagcccagacgcctggctgccattgctgtggctgagagagtg
gcagctgagagaggagagagcgtgggccagactgtcggttatcacatcagactagagagc
agggtctcccccaagacactgctgaccttttgcaccagtggagtgttcctcagaacattg
atggctggagatagcagcctgacaactgtcacacatgtaatagtggatgaggtgcatgag
cgtgatgggctgactgacttcctgctcactaagatgcgggatgtgcttcagaagatcccc
acactgaaactgatcctctccagtgcggctctggatacagacctgttccttcaatacttt
ggctcctgccctgtcatccacctcaaaggaaggcagtttgaagtgaaggaagtctttctg
gaggacattctgaggctgactggctttaataaggacatgagaaaattcaaggaagagaca
cagagaaaggagaagaagcagaaatgtttgatggagtggtgtatggcagtagagcacagt
tctgttgaggagaaaccgaggactcctgtgtctgccccaggcgtcctccaggacagcagc
tccttggacagaggggacagcactttcaacaagctgaatgagaatgatacagaacatctg
gagccatggctgcggaaggagatggactcaagcatttccagtgttttcctcagtgaagac
caggttgctttcattcagctcttcaacctcatcctctatgaaggtgttaacgtggactac
aggcacagtgagacaggggccacgcctctgatggtggcagcaggtcgagggttcctcact
cagatggagcagctgctcaacatgggggcagacatcaacatgaaggcctccaatgggtgg
acagccttagactttgccaaacacttccagcagacagaagctatggatctactccagtca
tcaattcccctgggagaggtgagcagcctggaagagtccactctggtgcaatgtggcagt
gcagagctgagcactgaggaacaggagctgctcaaactgtaccaccacagctttgatgat
gaccgtgtggacctggacctcatcatggatgtgctgcacaacatctgctccaccaccact
gatggtgctgtcctgattttccttcctggatacgacgagatagtggcactcagggaccgc
atcctgtatgacgataagagattctccaccctctctgagagataccaggtgttcactcta
cattcagacatgcagactctggatcagaagaaagccatgaagccctctccacctggtgtc
cggaagataattctttcaaccaacattgctgagacaagcatcaccatcaacgatgtggtc
tttgtcattgattcaggaaaggtcaaagagaagtcctttgataccctcagtcgtgtatcc
atgttaaagagagtttggatctcgaaagccagtgctctgcaaaggaagggaagagctggg
cgatgccaatcagggatatgctttcacctcttcagtcgactcaggttcaacaatatgcag
gaatttcaggttccacagctgctgcggatgcctctgcaggaactgtgtctgcaaaccaaa
ctgctggccccctcgtcctgtccagtagctgagttcctgtccaaagctccacaacctcct
gctggacatgccatcaggagtgctgtgcagatgctaaagacaatagatgctatggaccag
tatgaagacctgacagatctgggctatcacctggccgacctgcctgtggagccccacctg
ggcaagatggtgctgtgtgctgtggtgctcaagtgtttggaccccattctaaccattgcc
tgtacactggcctatcgcgacccctttgtccttcctgcccagggctctcagaaaaaagct
gctctactctgccgcaaatggtttacctctaacaccctcagtgaccacatggccctgctg
agagccttccaggcatggcagaaggcccgcagtgacggctgggagagaaccttctgtgag
aagaacttcctgtcccaggccaccatggacatgatacttggcatgcggacacaactgctg
ggacagctccgtgccattggttttgtgcgagcccgtgggggcagtgacatccgcgacgtg
aatctgaactctgaaaactgggctgtggtgaaagcagccctggtggctggcatgtatcca
aacctggtccatgtcaaccaggagtcctccttgctctctagtaacagggagaagaaggtc
cactttcatcccacatcaatcctgacccatttcaaggagaacagcccagcccaggccctt
cccacagactggttgatctacgatgagatgagccgaggtcacaggatggccactgtccgc
tgttgctccgtggtgactcccatcactgtggccatatttacaggcggtgcaatacaaccc
agctctgccctgcaggaacctgctgtacagaaagctaaagacagtctgcttgttgacacc
agtgacagtgagacagaggacctagctgaaatgagagttgatgattggctcatcttccag
ttggacagagaggctgcaggactggtgtatgaattgaggcagaagtggcagagtttgttc
atcaagaggatccgttgtccttcaaaaccctgttctcaacaagacgaggccatcctgcgg
accctggtttctgttcttacagcagaggagcaggaagcaggcctgcagcagcccacaggc
attggccagcggcctcggcccatgtcatcagaggatggctcccaggcttctgttaagaac
tccaagcacagcacccaactacacaccaacaccaccagtgacagagactggacgacaaga
gcgttccctgccgtgcatcgtctggcagccaggccttgtaggatgccagcaaccccaaat
ctgcaacagaagaaaaccagcagtagagatgaaacctcactgcccataaatcagctctcg
gatgaccctcactcctccagctctgtgaccttggacaatccctctgacagcccctgtctg
tcctcctcaggaaagatcctaaagtcactgttccctcagtgggctgttttatcagtgcgg
tacttcatcatgaagagcagcaatgtcaggaacatagacatttctcagcagaaagggatc
tggtccaccacaccaagcaatgagaacaaacttaccaaagccttcatggagaataacctc
atcatcctcatcttctctgttcagggctctggacacttccagggcgtggccaccttgcct
gactggctgtctgctaggcctcacatcggtccattcaacttaacctccttgccatgtttt
gaggtgctggagctggctggccagaggggagattttttttttgcaaatactggacgaata
atatggcttactgtgcagataattgtaccaactgaccgccgaagacaccagtgctccagt
tattctggctatgctcgcatgacatcagctgtcagtcaggagagctgccaggactggggc
ttcatgggactaggaggggttttcagtgtagagtggatccacaaggaaagtcttcccttc
cactgcacccaacaaatcctcaacccatggaacgacaacaagaaggtccagatcagcaga
gatggacaggagttagagccccaggcaggcagccaacttttgtcactatgggagagaaac
ccaaggaaccaagtgaagtaa
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integrated database retrieval system
