Euwallacea fornicatus (polyphagous shot-hole borer): 136339345
Help
Entry
136339345 CDS
T10685
Symbol
Dcr-2
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
efor03036
]
136339345 (Dcr-2)
Chromosome and associated proteins [BR:
efor03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
136339345 (Dcr-2)
microRNA pathway
RISC loading complex
136339345 (Dcr-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
ResIII
DEAD
Helicase_C
Dicer_dsRBD
PAZ
Dicer_platform
dsrm
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
136339345
NCBI-ProteinID:
XP_066138600
LinkDB
All DBs
Position
5:complement(3502874..3511898)
Genome browser
AA seq
1630 aa
AA seq
DB search
MVSKIEEADFLPRDYQVALTEIALKNNSVIYLPTGAGKTFIAILVLKQLQHSHQKYTEGG
KISFVVVNTVALVDQHAKCIEKRTNLSVGKYSGDMSLDFWPKTQWYQEFDKFQVLVMTVQ
ILVNLTNQRYLDLNKVNLIVFDECHRGVSDQPMRQICKSLADVCHKPRILGLTATLLNGN
CKPQNVLNEVRNLEITYHSKVATVEGLAQVSGFSTNPKEFVVTYQKHTLSAIEKKAHLIL
EQALLVLKAVKEDTPMVLRRPNTELKPLSKDEGFKKLRNILKDVQYHIELFGIFGGSKAV
LAHMIQLERLKIHCDNSVLHEVLCYAKTTLCWIKAMFQSVMENFSVEVNLSKFSSDKVLH
LIRIFNNYLKELSSKEPLCALIFTKRRFTAKVLYYILSDLSASGEQYSKIKPNFMVGYNS
NPYNDTRESLYTAKKNREVLQMFESKENNVLCASNVLEEGVDISTCSLVIKFDHPEEYRS
YIQSKGRARHPDSLYYMMVENTEIEKFRTRYQEFQLVEGELQRLLIGQNGLRTDPTEREI
NEMYQEDKIPPYYANGPGSAKVDMVSAISLLSQYCNSLPCDKYTVMAPEWYSEKKFPISD
KESPMRVVIVLPTMCPITDPIVGQFMSNLKMAKRAAALLACKSLHQIGELDDHLLPRRYV
VPDKDVNFLFPHYPKEKESLAGTNKNKRIHKKQIPLFLRGPIRPQKPFWLHIIQLSPLFE
RREELNYSTFYDMYVSNLCYGLITPHEVPTICDFPIYVSMGTLNVSLKVNVLTGELSETD
LLDIKQFNVLVLNDILRCLREFVMFDNGHNAETMLLVPVNKQLDTIDFEVLKEYKTVKEQ
FRELTSDEKLNLNVTQEDYLRKIVSPWYKDQGDYLVTEVTLRKSALSPFPNEQFGSYEDY
YNNKHNIRLLNAVQPLLYVKHLTKKMNFIKPQGAQAKRKREKSYEDLEIHLIPELVVKQD
FPAALWIQANLLPTLVSRFSFLFRLEEFRLKLAKAMSMGDVAEKQPLKLDEYLLSYEPHL
EKTAPINVLVTERKENISLPPVSYININKDYVKKMLEQEFPWKDTEEPKDIERDLDVTIV
DIDYYESFLSKVVNEGDSRLKNDVPVKQKDQLALTYFKNYEEKPICLIAKSDLSTGPDLY
LIYKAMTTAKANDIVNMERLETLGDSFLKLFGSLYIFLKFPTFTEGQATSLKGRLVSNKN
LFYLAVKHNIGGLMKSNDLQIADWLPPGFKIPDLIEKRIENGNTSLSSLYHLSVPIEEQI
SGELSQKTVDSIMELRLEENPSEEGLIQEVASLFKCNYIGDKKIADCVEALLGAYFQTCG
ILGGIRFIECIGIIPASENLMQLLEEPPSNPLLKPEKTLLDIQFYIPNWQDIENKILCYK
FNNRGYLLQALTHSSYSLNRLTHSYERLEFLGDAVLDFLITCHIFESRGYLDPGELTDLR
SALVNNNTFGSLVIRHGLHKHLLMINAKLQGMVDRFATFIESKKFVIDDEVLILLEEADA
EGLNLAEYVDVPKVLGDVFEALAGAIYLDSGKDLNVVWKIFHRLMWKEIETFSANVPKNL
VRKLYEFVPNAHPKFGDSKDATQGRVMVPLQFMADGRPQQVYGFGSNKAMAKKAAAKLAL
RQLCKHEIAH
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atggtgagtaaaattgaagaagctgattttcttccccgagactaccaggtagctctaaca
gaaatagccttaaaaaataattcagtaatttacctaccaactggagctggaaagacattt
attgcaattttggttttgaagcaactgcagcattcacatcaaaaatacactgagggtgga
aaaatctcctttgttgtggtcaacactgttgccctagtggatcagcatgcaaaatgtatt
gaaaaaaggactaatttgtctgtggggaaatacagtggagatatgtcacttgatttttgg
ccaaagacacaatggtaccaagaatttgataaatttcaagtgttggtcatgactgtacaa
atactggttaatttgaccaatcagcggtacctagatttaaacaaagtgaatttgattgta
tttgatgaatgccaccgaggggtttctgatcaaccaatgcggcaaatatgcaaatcctta
gcagatgtatgccacaaacccagaatacttggtttaacagcaacactgctcaatggcaac
tgcaagccccagaatgtactgaacgaagtacggaatttagaaattacctaccacagtaag
gtggccacggtggagggtttggcacaggtgtctggattctccacaaaccccaaagaattt
gtagtaacctatcaaaaacatacactctcggcaatagaaaaaaaagctcacttaattctg
gagcaagcacttcttgttctaaaggcagtcaaagaagacacccctatggttctaaggcgt
ccgaatactgaattaaagcctttgtcaaaggatgaaggtttcaaaaagttaagaaacatt
ttaaaagatgtacagtatcacattgaactatttggaatattcggaggatccaaggccgtg
cttgcgcacatgatccaattagagagactaaagatacactgtgataactccgttttgcat
gaagttttgtgttatgcaaaaactactctatgctggataaaggctatgtttcaaagtgta
atggaaaatttcagcgttgaggtgaacctgtccaagttttcgtcagataaggttttacac
ttgataagaatcttcaacaactacctgaaagaattaagttcaaaagaaccactatgcgcc
ttaattttcacgaaacgtcgttttaccgctaaagtgctctattacattttgagtgacctg
agtgcatcgggggaacaatattcaaaaattaaaccgaacttcatggttgggtataattca
aacccatacaacgacaccagagaaagtctatacactgcaaagaaaaaccgagaggtgttg
caaatgttcgaatccaaggagaataatgtgttatgcgcatcgaatgtgttagaagaaggc
gttgatatttctacgtgttcacttgtcataaagtttgatcatcctgaagagtacaggtcc
tacatacagtcaaaaggacgtgcaagacatcccgatagcttatattatatgatggtggaa
aataccgaaattgaaaaatttagaactagataccaggaatttcagcttgttgaaggagag
ctacaaagattgctcatcggccaaaatggtctaaggactgacccaacagaacgggaaata
aatgaaatgtatcaagaagataagattcctccatactacgcaaacggtcccggctcggca
aaagtggacatggtttcggccatatcactactgagccagtattgtaacagtcttccttgc
gacaagtacacagtaatggcccctgaatggtattcggaaaagaaatttcccatatctgac
aaggaatctcctatgagagtggttattgttttgcccacgatgtgcccaatcactgatcca
atcgtgggccagttcatgtcgaatttaaaaatggcaaagagggctgcagccttattggct
tgtaagagtttacatcaaataggggaactcgatgatcacctgttgcctcgaaggtatgtt
gtgccagataaggacgtaaatttcttgtttccacattatcctaaagaaaaggagtcactg
gctggaactaacaaaaataaacggatacataaaaaacaaataccattatttctacgtggc
cctatcaggcctcaaaaaccattctggctccacattatccagcttagcccgctgttcgaa
aggcgcgaagaactaaactattccactttctacgacatgtatgtctctaacctttgctac
ggtcttattactcctcacgaagtgcctacgatttgcgatttccccatttacgtaagcatg
ggaacattaaacgtttcccttaaagtgaacgtactaaccggtgagttgtcggagacggat
ttgttagacattaaacaattcaacgtgttggtgttgaacgatattctgagatgtttgcga
gaattcgtaatgttcgacaatggacataacgccgaaactatgttgttggtgcctgttaac
aagcagttggatacaattgatttcgaggtgttgaaagagtataaaacagttaaagaacag
ttccgtgaactaaccagtgacgaaaagttgaacttgaatgtaacccaagaagactatttg
aggaaaatcgtttcgccttggtataaagatcaaggggattacttggtaacagaggtaaca
ctgcgcaaatcggcgttgagtccatttcctaacgaacaatttggcagctacgaggattac
tataacaacaaacacaatattcgcttattgaatgccgttcagccgctgctctacgtcaaa
cacttgactaagaagatgaatttcattaaaccacaaggagctcaggcgaaaagaaagaga
gaaaagagctatgaggatttggagattcacttaattccagaattagtggtaaagcaagac
ttcccagcggcactttggattcaagctaatctattgccaacactagtgtcaagattttca
ttcttgttccgccttgaggaattccgtctaaaactagctaaggcaatgtctatgggcgac
gttgctgaaaagcagcccttgaagctcgatgagtacctactcagctatgaacctcatctc
gagaaaactgctcccattaacgtgctggtcaccgaacgaaaagaaaacatttctttacct
cccgtcagctatattaacatcaataaagactacgtgaagaaaatgctcgagcaagagttt
ccgtggaaagacaccgaagaaccgaaagatatcgaaagagacttagatgtcactatagtt
gacatagactactacgaatcatttttgagcaaggtggtcaacgaaggcgactctcgcttg
aagaatgatgtgcctgtaaagcaaaaagaccagttggctttgacgtatttcaagaattac
gaagagaagcctatttgtctcatagctaagagtgatttgagcacgggacccgatttatat
ttgatttacaaggcaatgaccacagcgaaagccaatgatatagtcaacatggagaggttg
gagactttaggggactcgtttttgaagctatttgggtcgctctacatattcctgaaattc
ccgactttcaccgaagggcaagctaccagtctaaaaggtcgcttggttagtaacaagaac
ttgttttatctagcggtgaaacataacatcggaggcttgatgaaatcgaacgatttacaa
atagccgattggctccctcccggttttaaaatacccgatttgatagaaaaacgtatcgaa
aatggaaatacgtccctctcttcgctctaccacctctcagttcctatcgaggagcaaatc
agtggcgaactctcccagaaaacagtggacagtatcatggagttgcgactggaagagaat
ccgagtgaggagggccttattcaggaagttgcgtctcttttcaaatgcaactacattgga
gacaagaagatagcagattgcgttgaggccttgttgggggcttattttcaaacttgcgga
attttaggtggcatacgtttcattgaatgtatcggcatcattcccgcctcggagaattta
atgcagctactggaagaaccaccgagtaatccgctactgaaacccgagaaaaccctctta
gatattcagttttatatacctaattggcaggacatcgaaaacaagatcctgtgctacaaa
ttcaataatcggggctacctattgcaggctctaacgcactcgtcatactctctgaatcgt
ttaactcattcttacgagagattagagttcctgggcgacgccgtcttggactttctgatt
acgtgccatatttttgagtcccgcgggtacctggatccgggcgagttgaccgatctgagg
tcggcactggtcaataataacacgtttggcagtttggtgatcaggcacgggctgcacaag
catctgttgatgattaacgcgaagctgcaagggatggtggaccgattcgcgacctttatc
gaatctaagaaattcgtgatcgatgacgaagtgctaattttgctggaagaagccgacgcc
gagggattaaatctggccgagtacgtcgatgtcccaaaggtattgggagatgtattcgaa
gcactcgccggagcaatatacctggacagtggtaaagacctgaacgtagtgtggaagatc
ttccatcggcttatgtggaaagaaatcgagaccttcagcgctaatgttccaaagaatctt
gtaaggaaattgtacgagtttgtgccaaatgcgcatcctaagttcggggattccaaggat
gccacgcaaggcagagtgatggttccattgcaattcatggcggacggacgaccacagcaa
gtgtacggattcgggtcgaataaggcgatggccaagaaggcagcagcgaaattagcactg
cgccagttgtgcaaacacgagattgcacactaa
DBGET
integrated database retrieval system
