Euwallacea fornicatus (polyphagous shot-hole borer): 136340033
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Entry
136340033 CDS
T10685
Symbol
Caf1-55
Name
(RefSeq) chromatin assembly factor 1 p55 subunit isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03082
ATP-dependent chromatin remodeling
efor03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
136340033 (Caf1-55)
03083 Polycomb repressive complex
136340033 (Caf1-55)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
efor03036
]
136340033 (Caf1-55)
Chromosome and associated proteins [BR:
efor03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
136340033 (Caf1-55)
Histone modification proteins
HAT complexes
HATB complex
136340033 (Caf1-55)
HDAC complexes
Sin3A-HDAC complex
136340033 (Caf1-55)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
136340033 (Caf1-55)
PRC2.2
136340033 (Caf1-55)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
136340033 (Caf1-55)
Heterochromatin formation proteins
Other heterochromatin formation proteins
136340033 (Caf1-55)
Chromatin remodeling factors
NuRD complex
136340033 (Caf1-55)
NuRF complex
136340033 (Caf1-55)
NuRF complex (fruit fly)
136340033 (Caf1-55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR19_1st
eIF2A
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
MIOS_WD40
NBCH_WD40
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
136340033
NCBI-ProteinID:
XP_066139843
LinkDB
All DBs
Position
7:complement(4830893..4833077)
Genome browser
AA seq
436 aa
AA seq
DB search
MGTIGDKGDAETFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTR
PEGKDHSLHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKI
EIEIKINHEGEVNRARFMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRG
HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTVGVGHTAVVED
VAWHLLHESLFGSVADDQKLMIWDTRCNNPSKPSHTVDAHTAEVNCLSFNPYSEFILATG
SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE
EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDE
EPDQMSADMETVAPSV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgggaacaataggagataaaggagacgcagagacctttgacgatgcagttgaagaacga
gttattaatgaagagtacaaaatttggaagaaaaacaccccattcctctacgatctggtg
atgacacatgccttagaatggccttcccttacagcccaatggttgcctgatgtaacaaga
ccagaagggaaagatcactccttgcataggctgattttggggacccatacgagtgatgaa
caaaatcatttgttaattgcaagcgtgcagctcccaaatgaagacgcccaattcgatgct
tctcactatgacaacgagaagggcgaattcggaggctttggttcagtttccggcaagatt
gaaattgaaatcaagattaatcatgaaggagaagtgaacagggccagatttatgcctcaa
aatccctgcgtcatcgccactaaaaccccctctagcgacgtgctagtgtttgactacacc
aaacatccaagcaagccagaccccaatggcgaatgccatcctgatttaagactgcgtggt
caccaaaaagaaggttatggactttcctggaatcccaatttaaatgggtaccttctctct
gccagtgatgaccacacaatttgtttgtgggacatcaacgccacccccaaagagaatcgc
gtcatcgatgccaaaactatctttacagtgggtgtaggtcacaccgctgtagtggaggac
gtggcttggcatttgctgcatgagagtcttttcggctccgttgcggatgatcagaagctc
atgatttgggacacgagatgcaacaatcctagcaaaccttcacatactgtagatgcgcat
actgcggaagttaattgtctcagcttcaatccttattcggaattcattctggcaactggg
tctgcggataaaactgttgccttgtgggatctgcgcaacctcaagttgaagctgcacagc
tttgagtcgcacaaggatgaaattttccaagtacaatggtcaccgcataatgagacgatt
ttggcttcgtccggaactgataggcggctgcacgtgtgggatctcagtaagattggtgaa
gaacagtctgctgaagacgcagaagatgggcctccagaattgctgtttattcatggagga
catactgctaagatttctgatttcagttggaacccgaacgaaccctgggtgatttgctcg
gtatcagaagacaacataatgcaagtgtggcagatggccgaaaatatctacaacgacgag
gagccagatcaaatgtccgctgatatggaaacagtggctccttccgtgtag
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integrated database retrieval system
