Euwallacea fornicatus (polyphagous shot-hole borer): 136340712
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Entry
136340712 CDS
T10685
Name
(RefSeq) polyadenylation and cleavage factor homolog 11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
efor03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136340712
Messenger RNA biogenesis [BR:
efor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136340712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136340712
NCBI-ProteinID:
XP_066141093
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Position
8:4849060..4862917
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AA seq
1193 aa
AA seq
DB search
MTTPEVIKAEYMSSLADLTFNSKHLINVLTMLAEENLPNAKIIVQAIEEHLAKVAVDVKL
PILYLVDCIVKNVGQMYTSIFSQNIASTFCTVFKVVDEKTRLEMFKLRQTWNDVFPQMKL
YAIDVQIHQIDPAWPVTAQPANNINLNSRFLINSTCINQANNSQKTEPSATPGPVSVKPA
LSAISAPSADMETLLMQEQLIQKQKELLVLQRKTLELEVLQTQVKLQEQIKAGGRRPPIS
TNILLKPEVANQLIPEVVTNKVKPSDIEYRSYSQPKIKPVNPALPSTRPSRDPRLIRRQQ
QQKLEQVAQEAPVVTTTSSVHDQKVAVLESNKNLHNKSSVRDIPRDPRLTKRGHKKSKFL
SKSREPFSDQKSRNVDKLTGAFPKLNPNSSNSLPSGDLDSPLKIKRLPDKHRKREKPREF
DGASSSKRGKMQNSNKEARKEESLQTKNEVPDNFVKSVENTNWNYVGPNLAGNTASIEDE
DLRLASTSSQNDNSIKVNSESVAPKQKSLEPPPPHMSSSLKKPMDVDLRPRHHRLSPTLP
KKRTSPEVSDQPSKKSRSFDVLFGSEDTDLRQIAVQAEEARENGVVDRPTTPPPPIISAE
KSIENSVRRALPASPIRSDLDAVRAKLANVTNRDKVLSRPSNFEVSNVISQSLVAAPTTG
GYQVQLPPNLPSTTAPQVPAMPLLNINELFQKLVASGVVKTQEKPQGHFQESAPIPLLTH
NRVSERAPAKPHQQKNRKPQRRKLPKILKPLTFNKPETLKIRQEALYNTMYTGMQCSSCG
MRFPLEASMWYSQHLDWHFRQNRRGKKNSRVANSRKWYYSLKDWKNYEELEDIEEREKNY
FDQQQQQAEVADEIDEEIEIPTVSADPKSTDEHCYMCRDTFEQFFNEEKEEWHLRNAIRM
EDKTYHPACYEDYQKSILNNTLNDSKNEEEDSQNDLIPGLEIALDDKDDDEEIVSLIDDA
EEVPEDALSPAKEEEVAPEDDGDDDDVILNEVAPVRIVVDDDDDEVPLTENNEPVVIKQE
KLVLDDDGFMDVDEIITLKEIGQVKIKSEPVEDARNSQDFRVADIEHNSDKRTEDEDLIK
VTPCEKNFVPVTSHLQLITSMDGNIELSAPTNAHSTISGGNKIKINISKPLPVITPKETS
ETGDNSDVIVKASEIPMEELDILNYKPALQNVPLKKLPPVQKCTELTGLCSIM
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacctgaggtgattaaggctgaatacatgtccagtttagcagacttgactttc
aacagcaagcatctaatcaatgttttaaccatgctcgcggaagaaaacttgcccaacgca
aagattatagtacaggcgattgaagagcatttggctaaggtcgctgttgacgtcaaattg
ccaattttatacctagttgactgtatagtgaagaacgttggacaaatgtataccagcatc
ttcagccaaaacattgcatccacgttttgcacagtttttaaagtggtcgacgagaagacc
cgacttgaaatgttcaaactgcgtcaaacatggaacgacgtattccctcaaatgaaactt
tatgcaattgacgtgcaaattcatcaaattgatccagcatggccagttactgcccagccc
gcaaataacattaatctcaattccagatttctgataaactctacgtgtataaatcaagcc
aataacagtcagaaaacagaaccttcggctactccgggcccagtttctgtaaaaccagct
ttgtcggctatttcagccccttctgctgatatggagacgttactaatgcaagagcaattg
atacagaaacaaaaagaattactggttttacagaggaagactttggaacttgaagtgttg
cagacccaagtcaagttgcaagaacagataaaagctgggggccgacggcctccaattagt
actaatatccttttgaaacctgaagtagccaatcaactaattcctgaagtggtcactaac
aaagttaagccttcggatattgaatatcgctcttatagtcaaccaaaaatcaaacccgta
aatccagccttgccttcgactcgtccaagcagagatcccaggttaatacgtcgacagcag
caacaaaagttggaacaagtggctcaagaagcgccagttgtcactacaacttctagtgtg
cacgatcaaaaagttgcagttcttgaaagtaataaaaatctacataataaatcgagtgta
agagatatccctagagaccctcgcttaacaaagagaggccacaaaaaatcaaaattctta
tccaaatcccgcgagccattttccgatcagaagtcgcgtaatgtcgataaacttacgggc
gctttccccaaactaaaccctaactctagtaatagcttgcctagtggcgatttagattcg
cccctgaaaattaaacgattgccggataaacacaggaaacgtgaaaaaccgcgcgaattc
gatggtgcctcgtccagcaaaaggggaaagatgcaaaactctaataaggaagccagaaag
gaagaatccttgcagactaagaatgaagtccctgataatttcgtgaagagcgtagagaac
acgaattggaattatgtggggcccaatttggcgggaaacacggcctctatcgaggacgaa
gatttgcgtttagcgtcgacgagcagtcagaatgataattccattaaagttaatagtgaa
tcagttgcaccaaagcaaaaatctcttgaaccacctccaccacatatgtcctcttcctta
aagaaaccaatggatgtagatctgagaccacgacaccatcgcctttctcccactttgcct
aaaaagcgaacctcacctgaggtctccgaccaaccatcaaagaaaagcaggagttttgat
gttttatttggaagcgaagacactgatttacgacaaattgccgttcaagctgaagaggct
cgcgaaaatggagtcgttgatagacctacaacacctcccccgccgattatttctgcagaa
aaatcaattgaaaattctgttagacgggctttacctgcatcaccgataaggagtgatttg
gatgccgtcagggccaagttggccaatgtcaccaatagggataaagtattgagtagacca
tctaactttgaggtatcaaatgtcatctcccaatcgttggtagccgcgcccaccactggg
ggctatcaagtccagctgcctcccaacttgccctccacaactgcgccgcaggtacctgct
atgcctctgttgaacataaatgagcttttccagaagctcgtcgcttctggggttgttaaa
actcaggaaaaacctcaaggacattttcaggaatcggctcctatccctttacttacgcat
aacagagtttctgagcgagcccctgcgaaacctcaccagcaaaaaaatagaaaacctcaa
aggcgcaagttgcccaaaatactaaagcctctgacttttaacaaaccggaaactttgaaa
atccgccaagaggcgctttataataccatgtatacaggcatgcagtgctcaagctgcgga
atgcgattccctcttgaggccagtatgtggtatagtcaacatctagactggcacttcagg
cagaatagacgtggcaagaagaattctagggtagcaaatagcaggaaatggtactattca
ttgaaagattggaaaaattatgaagagctggaagatattgaggaacgggagaaaaattac
tttgatcaacaacaacaacaagccgaagtggcagacgagatcgatgaagagattgaaatt
cccacagtttcagccgatcccaagtcaaccgatgaacattgctacatgtgtagagatacc
tttgagcagtttttcaatgaagagaaggaagaatggcatctgcgcaacgccattagaatg
gaggataagacttatcatccagcttgttacgaggattatcaaaagtcaattctcaataac
acattgaatgacagcaaaaatgaagaggaagattcccagaatgacttgattccggggctt
gaaatcgccctggacgataaagatgatgatgaagagattgtttcattgattgatgatgct
gaagaggtcccggaagatgctcttagtcctgcaaaggaagaagaagtggctccggaagat
gatggcgatgacgatgacgttatcttgaatgaagtggcccctgtcagaatcgttgtagac
gatgatgatgatgaagttcccttaacggagaacaatgagccagtagtcattaaacaagag
aagcttgttttagacgatgatggttttatggacgttgatgaaatcattacgctaaaagaa
atcggacaagtgaagataaagagtgaacctgtcgaagatgctcgaaacagtcaagatttc
cgggttgcagacatagagcacaactcagacaaaagaactgaggatgaagatttgatcaaa
gtaacgccctgtgaaaagaattttgtcccagtgacatcacatctccagctaataacttca
atggatggaaatatagaattaagcgcccctaccaacgcgcattccactataagtggagga
aataagattaaaataaacatttcaaagccattacctgtgataacccctaaggaaactagt
gagactggtgataatagtgatgtaatagtgaaagctagtgaaatccccatggaagagctt
gatattctgaactataaacctgctcttcaaaatgtgcccctgaaaaagttacctcctgtc
cagaaatgcaccgagctgaccggattatgctctataatgtga
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