Euwallacea fornicatus (polyphagous shot-hole borer): 136340851
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Entry
136340851 CDS
T10685
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor04512
ECM-receptor interaction
efor04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
136340851
04518 Integrin signaling
136340851
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
efor00536
]
136340851
Glycosaminoglycan binding proteins [BR:
efor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136340851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
136340851
NCBI-ProteinID:
XP_066141351
LinkDB
All DBs
Position
8:525645..549586
Genome browser
AA seq
1583 aa
AA seq
DB search
MKYETYILTILVIATVFNWANARVRRKKIKKAIPSTEVPTTEDPNFGVTKATVDEYINTP
SRKVDQSLKINLYPKDSESEYYSPDSQNKNFRKNRKRKTVKRKVEGIQNQQPSEDYLTDY
DYNEENDYNEGNNKGFIPFTTPQPPDEQPQFVDEYPKGRVEVVINEPSSESHVAAFDCSF
DGKFYKNADKWSVGACTNCTCLDGKVECTTDDICPQSVRPTRIPLVDDPYPGPRGETGSP
GQPGRPGESGLVGSPGNPGIPGPPGPPGPLPDLTAYYAQLADANRANDKGPQVLEPFQYV
QAQVGSPGPRGSPGEQGPPGPQGFQGTRGEIGEPGLPGSIGPIGLRGPPGPPGKDGDKGD
DGETGAPGAIGAPGNRGLPGMPGLPGLKGHRGFPGLDGPTGQQGPPGEKGVQGVPGFVGL
TGSPGAAGPRGERGREGPPGPPGLRGIDGPAGPPGSQGNAGKPGPPGFPGIIGAKGDQGI
AGPPGGQGLQGPRGETGRPGEPGETGPEGPPGKDGMPGEKGANGSPGIIGPIGFPGSRGP
PGLDGNPGPTGAKGLQGIPGERGYKGEAGQKGEVGSQGFRGLPGMTGPEGKRGRRGNRGP
PGPSGPQGERGLTGITGLPGPDGAPGPKGQAGATGSQGAPGPKGSQGELGRPGELGPQGP
RGLPGRSGLSGKAGSPGDRGLPGQDGKPGEPGIQGIQGIPGPIGPTGDKGIPGESGKDGE
PGPQGSPGPRGDAGKEGAPGPQGPPGLQGHDGERGPSGVAGPRGFQGLPGNPGNPGQPGK
DGEIGLQGPPGLQGTAGIRGERGFPGERGPVGQPGQPGAKGIAGAQGLDGPSGMPGPRGI
KGHQGPMGLIGLPGLRGQPGQQGEKGERGAFGPMGPEGPPGHQGERGLIGPSGLPGPPGE
PASPGDPGTPGLQGEPGASGSPGERGPIGQVGPQGFPGPPGLIGLPGGKGERGSLGPKGL
QGNPGPIGRPGEPGSQGPIGLTGAKGARGETGARGDTGPIGPQGRNGETGQAGHPGNAGQ
PGAPGLPGIKGSQGDQGRSGNPGPQGPSGPPGLEGPKGESGSDGRPGVPGPPGSQGPAGE
RGLPGLPGIQGDKGLIGHIGSTGEPGVPGKPGKEGPPGPQGMVGPPGMTGLTGDQGPEGP
SGKIGLPGISGRPGDRGPQGSPGTPGNAGPTGLPGPPGPIGPIGLAGERGPIGETGPQGV
EGRPGERGKQGPPGAQGRKGDTGEPGPKGAKGHTGLMGLQGLPGAPGLVGEKGSLGSPGS
SGKDGDIGPRGFPGRDGNPGSPGLPGPIGLRGEPGAEGRPGLPGQPGPPGLPGPPGEGIG
YDAASLAVILANTNTQKGPDPQSDAPYVPRVFGKELSIEETKDLITKAYEHLKASFEKYK
RPNGEENNPGRTCRDILAAYPDYPSGQYWIDPNDGDPRDSILVHCDMTKKASCILPSPAK
SPELNHMGNESDIWLSEIKGGLKINYKADSTQIGYLHLLSSRATQNITYHCRNSIAYYDV
IKHTYRKGLKLMSYSDVEITPKGSMRYEALLDECKYRKDVWAKSVFEFTTDKPSRLPIMD
IGLRDVGKIDQKFWVDIGPVCFY
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacgagacgtacatcttgacaatcttagtaatcgccactgtcttcaattgggct
aatgctagagttcgaaggaaaaaaattaaaaaggcgattccttcaactgaggtcccaaca
acagaagatcccaatttcggtgtaactaaggcaactgtagatgaatatataaatacccct
tctcgaaaagttgatcagtctctaaaaataaatttatatcccaaagactcagaaagtgaa
tattattcgccagattcacaaaataaaaattttagaaaaaatagaaaacgaaaaactgtt
aaaagaaaagtcgaaggaattcaaaatcaacagccaagtgaggattatcttactgactac
gattataatgaggaaaatgattacaatgaaggaaataacaaaggttttataccttttacc
acgccacaaccacctgatgaacaaccccaatttgtagatgaatatcccaaaggtcgagtg
gaggttgttattaatgaaccatcgtctgaaagtcacgttgcggcatttgactgcagcttt
gatggaaaattctacaagaatgcggacaaatggagtgtaggagcatgtacaaactgtact
tgccttgatggaaaagtggaatgtaccaccgatgatatctgcccacaaagtgtgcgacct
accagaataccgctcgtcgatgacccttatccaggtcccagaggagaaactggctctcca
ggtcagccaggccgtcctggtgagagtggtttagtaggatcgccaggtaatccagggata
cctggtccacctggtccgcctggaccacttcctgatttaacggcttattacgctcaatta
gctgacgcaaatcgagccaacgataaaggaccgcaagtgcttgaaccttttcaatatgtg
caagctcaagtgggatcaccaggtccaaggggatcccctggcgagcaaggtccacccggc
ccacaaggattccaaggtactagaggagaaattggagaacctggacttccaggttcaata
ggaccaatagggctaaggggtccacccggacctccaggaaaagatggagataagggagat
gatggagaaacaggtgctccaggagctataggtgcaccgggtaacagaggccttccagga
atgcctggcttgcctggactcaaaggtcatcgagggtttcctggcttggatggtccaact
ggtcaacaaggtcctcctggcgaaaaaggagtgcaaggggtacccggtttcgttgggtta
accggctccccaggtgctgcgggtcctagaggagaaagaggaagggaagggccaccgggt
cctcctggcctcagaggaatagatgggcctgctggcccgccaggttctcagggtaacgca
ggaaaaccgggaccaccaggttttcccgggataattggcgcaaaaggagatcaaggaatt
gctggccctcctggtggtcagggacttcaaggaccaaggggtgagaccggccggccggga
gaaccaggggaaaccgggccagagggtccgcctggaaaagatgggatgcccggggaaaaa
ggtgcaaatgggtcaccagggataattggacccatcgggtttccaggttccaggggtcct
ccaggattagatggaaaccctggacccacaggagctaaaggtttacagggtattcctggc
gagcgaggttacaaaggagaagctggtcaaaaaggtgaagttggctcccaaggttttcga
ggactacccggaatgacaggtcctgaaggaaaaagaggcaggagaggaaatagaggtcca
cctggaccatctggcccccaaggtgaacgaggacttactggaataacaggattgccaggg
ccggatggagcccccggcccaaaggggcaagctggcgctacaggatcccagggagctcct
ggacccaaaggatctcaaggtgaattgggaagacccggcgaactcggacctcaaggcccc
aggggattgccgggacgctccggcttatcaggcaaggccggttcacctggagacagaggt
ttacctggacaggatggcaaacccggagagccaggcatccaaggcattcaaggaattcca
ggtcccataggcccaacgggcgacaaaggaataccgggagaatctggaaaagatggtgaa
cctggtcctcaaggttccccagggcctagaggggatgcaggaaaagagggtgcccctggg
ccgcagggaccacctggtttacaggggcatgatggtgaaagaggaccttcaggtgttgca
ggaccaagaggatttcagggacttccggggaatccagggaatcctggacagccaggaaag
gacggagaaataggtctacaaggccctcctggtcttcagggcacggcaggtattagaggt
gaaagaggattcccaggcgagaggggtccggttgggcagcctggacaacctggggccaaa
ggaatagcgggagcgcaaggattggacggtccttcgggcatgcctgggccaagaggaatc
aaagggcatcaaggtccaatggggctgattggtctacccggtcttagaggtcaaccaggt
caacaaggcgagaaaggcgaaaggggagcttttggacccatgggcccagaaggtcctcca
ggccatcaaggggagagaggactcattggcccatcaggattgccaggcccacctggagaa
cctgcaagtccaggtgatccaggtacgccaggccttcaaggagaaccaggtgcctctgga
agtccaggggaacgaggaccgattggccaagtgggtcctcaaggattcccaggacctccg
ggtttaattgggttaccgggaggcaagggcgaaagaggttctcttggtcccaagggctta
caaggtaatccagggcctattgggcgaccgggcgaacccggttcacaaggacctataggg
ttaacaggagcaaaaggagctagaggtgaaacaggcgcacgtggtgacacaggacccata
gggcctcaaggccgaaatggagaaacaggacaggcgggacatcccggtaatgcaggacaa
ccgggtgcaccgggtttgccaggtatcaaaggcagtcaaggtgatcaaggcagatcagga
aatcccgggccacaaggtccttctgggcctccaggcttggaaggtcctaaaggcgaatca
gggtctgatggccgtcctggtgttcctggtccacctggatcgcagggccccgctggagag
agaggtttacctggtctacccggaattcaaggagataaaggacttatcggacatattggt
tccacgggagaaccaggtgttccaggaaagccaggaaaagaaggtcctccaggccctcaa
gggatggttggaccgccaggaatgacaggactcactggagatcaaggtccagaaggtcct
tccggaaaaatcggcttaccgggcataagtggacgacctggagatagaggtcctcagggt
tcacctggaaccccaggaaatgcaggtcccacaggattgcctggacctcctggcccaata
ggaccaataggcttagctggtgaaagaggtccgattggagaaacgggccctcaaggggtg
gaaggccggcctggagaaagaggaaagcaggggcctcctggagcgcaaggtcgtaaaggg
gataccggcgagcccggtcccaaaggggctaaaggccatacaggcttaatgggtttacag
ggtctcccgggtgcacccggactagttggagaaaaaggaagtttaggttcgccggggagt
tcaggcaaggatggtgacataggaccgagaggattccctggtcgtgatggcaatcccggc
tcaccaggtctacctggccctattggtttaagaggagagcctggtgccgaaggaaggccc
gggctcccagggcaaccaggcccacctggactaccaggaccaccaggagaaggaataggt
tacgatgctgcgtctttagctgtaattttggcaaatacaaatactcaaaaagggccagat
ccgcagtctgatgcgccgtacgtacccagagtctttggcaaagaattgtcaattgaagaa
actaaagaccttatcaccaaagcttacgaacatttgaaagcttcgtttgaaaaatacaaa
agaccaaatggagaggagaacaaccctgggcgcacatgcagggacattttggcagcgtat
cctgattatccaagtgggcaatattggatagaccctaatgatggcgatcctagagattcc
attttggttcactgtgacatgacgaaaaaagcttcttgtatattgccaagccccgcaaaa
tcgccggagttgaatcacatgggaaatgaatccgatatttggctgtcagagataaaaggc
ggtttgaagattaattacaaagccgattccactcagattggttatttacatttgttatca
tcaagggccacacagaatattacctaccattgccgaaattcgatcgcttactatgatgtg
attaaacacacttaccgaaagggtctaaaactaatgagttatagtgacgttgaaatcaca
ccgaaaggctctatgcgatatgaagctctcctggatgagtgcaagtatcgcaaagatgtc
tgggctaaatcagtattcgaattcacaactgacaagccttcaaggctgccaatcatggat
attggacttagagacgttggaaaaatagaccaaaagttctgggttgacataggtcctgtc
tgcttttattga
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integrated database retrieval system
