Euwallacea fornicatus (polyphagous shot-hole borer): 136341962
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Entry
136341962 CDS
T10685
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03008
Ribosome biogenesis in eukaryotes
efor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
136341962 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
136341962 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efor03019
]
136341962 (pcm)
03009 Ribosome biogenesis [BR:
efor03009
]
136341962 (pcm)
03016 Transfer RNA biogenesis [BR:
efor03016
]
136341962 (pcm)
03036 Chromosome and associated proteins [BR:
efor03036
]
136341962 (pcm)
Messenger RNA biogenesis [BR:
efor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136341962 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
136341962 (pcm)
Ribosome biogenesis [BR:
efor03009
]
Eukaryotic type
Pre-60S particles
RNases
136341962 (pcm)
Transfer RNA biogenesis [BR:
efor03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
136341962 (pcm)
Chromosome and associated proteins [BR:
efor03036
]
Eukaryotic type
Gene silencing
piRNA pathway
136341962 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
136341962
NCBI-ProteinID:
XP_066143460
LinkDB
All DBs
Position
11:complement(3224095..3230338)
Genome browser
AA seq
1482 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVVREYQIPEFDNMYLDMNGIIHLCSHPDDHNPHFRITEEKI
FQDIFHYIEVLFRLIKPRKLFFMAIDGVAPRAKMNQQRGRRFRSAKDAEKQEAEARKKGE
ILPTEARFDSNCITPGTVFMARLHQELKHFCVDKISNDPIWKDVKIILSGHETPGEGEHK
IMDYIRYLRSQPGYDPNTRHCLYGLDADLIMLGLCSHEPHFSLLREEVKFGKKSSKHQSV
PEEITFFLLHLSLMREYLELEFASLKEKLVTFKFDLEKIIDDWVLMGFLVGNDFIPHLPH
LHIASGALPILYMTYKEVLPTLDGYINEGGDLNLPRFEKFMQQLATFDFDTFEEIRDDLM
FMEAKTGRKMNTHSKVSMGVKKLEEWSNEIGDLDESLEPEEDTPARDSGLEALIRAAADL
DIPSDEDDGEDDDDKAFTNYKKDYYMNKLEYAKVTPEVLRAQAEGYVRAIQWNLNYYYNG
CCSWSWFYPHHYAPYISDIKGFSDLKLEFNLGSPFKPYEQLLAVLPAASKTLLPTAYHEL
MTSEESPLKSYYPENFQTDKNGKRQEWEAVVLIPFMDEKSLLEAMQECNERLTPEERKRN
RHGPMLAYTRSSRDLGIYEGSHLCPTIKHNYSLVEEFTIEDIRVPKEKLFKGLYPGVALD
VYFPGFPTMKHLKYKPELKKARVKVFEQASRSENMILHIIEDDKEQDTEKSDVIPWELVG
ANVFVAWPHLVEARIVSIQNKNIRYVSMGESNQYNTEELKNGKAILKDESRAIVEHYATR
LGVDVGPVEMLCKVQVMIGRKYVFAPNGRLTLEKQFSEITANYPLQTIVSKIDTFDSHHT
IQRNIQELFAVGEICFVLGNPHYGSQGIVTENKDVTKTGRIFLAVVIAEEPNFDSVLQIK
ENLIRGYKTLFRAASSFGMSHYVYARITGSIFVEVPDGSGGFKNSNIGLDLKFNKRNQEM
PGYTKRIDITWYYTEQCSQLVGEYAEKFPEVFQYLADHGSNDNIRAENMFPESDWEEKMA
ALQEWLATLPTHSIEKQQCGSQKTERAVVEEIERVVDEYTRTPKGKTVVMKVRPSSLYKP
DLQSGSLPPDPKVQTEIFDRIINTRKGFTVPFGLKGTVIAITESASNNPRDTLYDVVFDK
SFKDGMELNCSPERGYKLPSTAFINISYGKRLYNEKAGNGGRVEQETPWVNINFNVAAPN
VQSRRGIPDQYSYYPQKNRKKQLKPGEGSAFAQFTSQMKNQPNSSEKPRERTKINEQISP
IKPAQPEVLVFNNKEAVDNPKENEKPLVNTNFLKNLLKLNENHTKQEAAAHSPNVPFEVL
AQKVANTPASIRLLTYYQSNGLGVPRYEHFKTGDKYKAQVSLTNGQLVMGEPAENKEEAT
ENVASVILGLLMKKGPQSNNGSVLPEPPKTWVETPKEKDQALKVALQNPFVPTQVMKRQS
SKNSEERKISETEKQPAPAMGQAPQQRKPRTSRIAANFNKKI
NT seq
4449 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccctaaattttttcgatatattagtgaacgctacccctgtttaagcgaagtt
gtgagagagtatcagattcccgaatttgacaatatgtatttggacatgaacggcatcatc
cacttgtgttcgcatcccgatgatcacaatcctcatttccgtattactgaagaaaaaatc
ttccaagacatatttcactacatagaggtgctgtttcgactgattaagccaagaaaattg
ttttttatggccattgatggagtggcgcctcgtgctaagatgaatcaacagagagggcgt
agatttaggtctgctaaagatgcagagaaacaagaagctgaggctcgaaagaaaggagag
attttacccactgaggcgagatttgattctaattgtatcacaccaggcactgtatttatg
gcgcggttgcatcaagagttgaagcacttttgtgtagacaaaatttcaaatgacccaata
tggaaggatgttaaaattattttgtcaggacatgagaccccaggagaaggtgaacataaa
ataatggattatataagatatttaagatcacaaccagggtatgatcctaatactcgacat
tgcttatatggattagatgctgatttaataatgttaggcttgtgcagtcatgaacctcac
tttagtttgcttcgtgaagaggttaaatttggtaaaaaatcttctaaacatcaatcagtt
cctgaagaaatcacattttttctcttgcatttgtcattaatgagagaatatttggaacta
gaattcgcctcgttgaaagagaaacttgtcacctttaaatttgatttagaaaaaattatt
gatgactgggttctgatgggttttctggtaggaaatgatttcattcctcacctgccacat
ttgcacatagcaagtggggctttgcccattttatacatgacttataaagaggttttgccg
actttagatggatacataaatgagggtggggatttgaatttgccaaggtttgaaaaattt
atgcaacaactagccacattcgattttgacacttttgaggaaatcagggatgatttgatg
tttatggaggccaagactggacgcaaaatgaatacacattcaaaggtttccatgggagtt
aaaaaattagaagaatggtcaaatgaaataggagacctagatgagtctttagaacctgaa
gaagatactcctgccagagactcaggattggaagctctaattagagctgcagctgactta
gatataccctcagatgaggatgatggtgaagacgatgatgataaagcgttcacaaactac
aaaaaggattattacatgaataaacttgaatacgctaaagtgactcctgaggtactgcga
gctcaagctgaaggctacgttcgtgctattcaatggaatcttaactattattacaatgga
tgttgttcttggtcctggttctatcctcaccattatgcaccttacataagcgacattaag
gggttcagtgacttgaagttggagtttaatttaggatcacctttcaagccttatgagcaa
ttgttagcagtgttgcctgcagcaagcaaaactctattacccaccgcttatcatgagtta
atgactagtgaggagtctccactaaaatcttattacccagaaaactttcaaacagacaaa
aatggcaagaggcaggaatgggaagctgtggtgcttattccatttatggatgaaaaatcg
ctgctggaagcaatgcaagagtgtaatgagaggttgacgcctgaagaaagaaagaggaat
aggcatgggcctatgttagcatatactcgatcttcaagagatttgggcatttatgaaggg
tcacacctttgtcctacaataaaacataattatagtctagtagaagaatttactatagag
gatattcgagtgccgaaggagaagctattcaaggggctctatccgggggttgctttggat
gtctatttcccagggtttccaacgatgaaacatttgaagtacaagcctgaattaaagaaa
gcacgggtgaaagtatttgaacaagctagtcgttccgaaaatatgattcttcatattatt
gaagacgacaaagagcaagacacagaaaagtcagatgttataccttgggagcttgtagga
gccaatgttttcgtggcttggcctcatttagtagaggccagaattgtctccattcaaaat
aagaacatcaggtatgtcagcatgggggaatccaatcagtataacactgaagaattgaaa
aacggcaaggccatcctgaaggatgaatcgcgagccatcgttgaacattatgccacgaga
ttaggggtggacgtcggacccgtagagatgctatgcaaggttcaagtgatgatcggtcgc
aagtacgtttttgcacctaacggtagattgaccctggagaagcagttctcggagattact
gcgaattatcctctgcaaactatagtgagcaaaatagatacttttgactcgcatcataca
atacaacggaacattcaagagttatttgccgttggggaaatttgttttgtgttaggaaat
ccacattacggcagtcaaggcattgtaacagaaaacaaagatgtgaccaaaactggtcga
attttcctggccgtggttatcgctgaagaacctaactttgacagtgtcctacagataaaa
gaaaacttaatacgcggttacaaaactttattccgcgccgccagttccttcggtatgagt
cactacgtttatgcgcgaatcaccggttcaatatttgtggaagtcccagatggatcggga
gggtttaaaaactctaacatcggattagatttgaagttcaacaagcgaaaccaggagatg
cccggttacactaagagaatcgatattacgtggtattatactgaacagtgttcacagcta
gtgggggagtatgcagagaagtttcctgaagtgtttcagtatttggctgaccatgggtcg
aatgataatattagagctgaaaatatgtttcctgagtcggattgggaggagaaaatggct
gctttacaggaatggcttgcaacgctccctacccatagcattgagaagcagcagtgcggc
tcccaaaaaaccgaacgcgcggtagtcgaagaaatcgaaagggttgttgatgagtatact
agaactcccaaaggcaaaactgtcgtcatgaaagtcagaccgtcctctctctacaagccg
gatctgcagtcgggtagcctaccccccgatcccaaagtgcagaccgaaatattcgaccgg
ataatcaatacgagaaagggctttaccgttccttttggtcttaaaggtacagtgattgcc
atcactgagtctgcaagtaataatcccagggacactctatacgacgtggtctttgacaag
tcgttcaaggatggtatggaactgaattgctcaccggagcgaggttataagttgcctagc
actgcttttataaatatttcgtatggcaagagattgtacaatgaaaaggctggaaatgga
ggtagagtggagcaggaaaccccttgggtgaatataaactttaatgtggctgctcccaat
gtacaatcacggcgtggaattcctgaccagtattcctattacccgcaaaaaaacaggaag
aagcagctaaaacccggtgaaggttccgcttttgctcaattcactagccaaatgaaaaat
cagccaaattcttctgaaaagccacgagaacgcactaaaataaatgagcaaatatcccct
attaaaccagcacagcctgaagttttagtatttaataataaagaggcagttgataacccc
aaagagaatgaaaaaccactggtcaataccaatttcctaaaaaatttactaaaacttaat
gagaaccatactaaacaggaggccgctgcccattctccaaatgtaccattcgaagtttta
gctcaaaaggtggcaaatactccagctagcattcgtttacttacctactatcagtctaat
ggtcttggagtgcccagatatgagcactttaaaactggcgataaatacaaggcgcaagtg
agtctaaccaatgggcaactggtaatgggcgaacctgccgaaaacaaagaagaagccacc
gaaaatgtagcgtccgtcatattggggttgttaatgaaaaagggtccacagtcaaataat
ggcagcgttcttccggaacccccaaaaacttgggttgaaacgcccaaggaaaaagatcaa
gcgttgaaagtagccctccagaatccttttgtacccacacaagtaatgaagagacaaagt
agtaagaactccgaagaaagaaaaatctctgaaacggagaagcagccggcgcctgcaatg
ggccaggctccccagcaaagaaagccgagaacgtcgagaatagctgccaattttaataag
aagatttaa
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integrated database retrieval system
