Euwallacea fornicatus (polyphagous shot-hole borer): 136343305
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Entry
136343305 CDS
T10685
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efor03016
]
136343305 (RtcB)
Enzymes [BR:
efor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
136343305 (RtcB)
Transfer RNA biogenesis [BR:
efor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
136343305 (RtcB)
Prokaryotic type
tRNA splicing ligases
136343305 (RtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
136343305
NCBI-ProteinID:
XP_066146049
LinkDB
All DBs
Position
1:complement(5026329..5029477)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKITDHSWRIKKGFQPNMNVEGIFYVNQTLEKLMLDELRNACRPGMV
GGFLPGVKQIANVAALPGIVGKSVGLPDIHSGYGFAIGNMAAFDMNDPNSIVSPGGVGFD
INCGVRLLRTNLFKGDVLPVKEQLAQSLFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSTRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAACKMGIEDVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACARIN
SVEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNLAPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
LETFGSTCHGAGRALSRAKSRRNIEYTEVLQKMMQMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttcgccaatacaatgaagaacttaagtacttggaaaaaataactgaccacagc
tggcgtatcaaaaagggctttcaacccaacatgaacgtcgagggtatattttatgttaat
cagaccctggaaaaacttatgctggacgagctccggaatgcttgtagacctggtatggtt
ggaggcttccttcctggtgtaaaacagattgcaaatgtagctgcacttcctggaattgtt
ggcaagtcagtagggttgccagatattcattcagggtatggatttgcaattgggaacatg
gcagcatttgacatgaatgaccctaattctatagtaagtcctggtggggtagggttcgat
attaattgtggagtaaggttgctgaggactaatctatttaagggtgatgttttacctgtt
aaagaacagctagctcaaagcttatttgatcacattcctgtaggtgtaggatccaaaggt
attataccaatgaatgcaaaagatttggaagaagcattggaaatgggcatggattggtct
ttaagagagggttacatttgggctgaagataaggaacactgtgaagaatatggaagaatg
ctaaatgctgacccatctaaagtcagcaccagagctaaaaaaagaggtttacctcagttg
gggactttgggcgcaggcaatcattatgcagaaatccaagtggtggatgaaatttatgac
aaatttgcagcatgcaaaatggggattgaggatgtgggtcaagtatgcgttatgatccat
tctggaagtcgaggttttgggcatcaagtagccaccgacgcgctagtgcagatggaaaaa
gcaatgaaacgggacaacatagaaaccaatgatcggcagttggcatgtgccagaatcaat
tctgtggagggacaagattatttaaaatccatggctgcggcggctaattttgcttgggtc
aacaggagctctatgacatttttgtgtcgtcaggcatttgcaaagcagtttaatttggct
cctgatgatttagatatgcatgtaatttatgatgtttctcataatatagctaaagtggaa
gaacatattgttgatggcaaacagaaaacgcttttggttcacagaaagggatccacgaga
gcctttcctcctcaccatccattaattcctgtcgattatcagttaacagggcaacctgta
ttaatcggtggtactatgggcacttgcagttacgttctcaccggtaccgaacaagggatg
ttggaaactttcggatcaacatgtcacggtgctggacgagcactgagtagagccaaatct
cgtcgaaacatcgaatataccgaagttctgcagaaaatgatgcagatgggtatttcaatc
cgagtagcctctccgaaattggtgatggaagaagctccagaatcgtataagaacgtgact
gatgtggtgaatacgtgccatgcagcggggatatctaagaaagccatcaaacttaggcca
attgctgtcattaaaggatag
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