Euwallacea fornicatus (polyphagous shot-hole borer): 136344344
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Entry
136344344 CDS
T10685
Symbol
Rrp42
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136344344 (Rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efor03019
]
136344344 (Rrp42)
Messenger RNA biogenesis [BR:
efor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
136344344 (Rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
136344344 (Rrp42)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
136344344
NCBI-ProteinID:
XP_066147804
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Position
17:2161375..2163284
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AA seq
283 aa
AA seq
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MSLSEAEKTFILHGVAENFRIDGRDREGYRPMEIETDIVQHAFGSARLRLANTDVLVAVK
IEVDTPLPEKPFEGKIEFFVDCSANATPDFEGRGGEDLAVELSNILSSAYGSYKTLDLRK
LCILKGKKCWKLLVDILILECGGNLFDAVSLAVKAALYNTQVPKIQAVNVDGDNVEIEVS
DNVFDCESLDITNAPVLVTVCKIGECCIVDPSLGEEQCTVGSVVVSVSGDSFSTITSIGT
GSLHEETLFECLDLGQKVGIRLNSALMEILSQIPAHQDIGFLK
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgtccctctccgaagccgagaaaaccttcattttacacggagtagctgaaaacttccgc
atagacggacgagaccgtgagggctacaggcctatggaaatagaaactgatatagtccaa
catgcctttggttctgctaggttacgactagcaaacactgacgttttggtggccgttaaa
attgaagtcgataccccactgcctgagaaaccgtttgaggggaaaattgaattttttgtc
gattgctctgcaaatgcaactcctgattttgaaggcagaggtggggaggatttagctgtt
gaactctcaaatattctctcatcagcatatggctcatataagactttagatttacgaaaa
ctttgtattttaaagggaaagaagtgttggaagctgttagttgatatattaattctagaa
tgcggcggcaatttatttgacgcagtatcgttagctgtaaaagcggccttatacaacact
caagtaccgaaaattcaagccgtcaatgtcgatggggataacgttgaaattgaagtatct
gataacgtttttgattgcgaaagtttggatatcacaaatgctccagttttggttacagta
tgtaaaataggagagtgctgtatagtagacccaagcttgggtgaagagcaatgtacagtt
ggttcagtagtggtgtccgtatcaggagacagtttcagcacaatcacctcaattgggaca
gggtctctgcatgaagagactttatttgaatgtttagatttgggtcagaaagtgggaatt
aggttgaattcggctttaatggagattctcagccagattcctgcccatcaagacattgga
tttctgaaatag
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