Euwallacea fornicatus (polyphagous shot-hole borer): 136347886
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Entry
136347886 CDS
T10685
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03030
DNA replication
efor03410
Base excision repair
efor03420
Nucleotide excision repair
efor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136347886 (Gnf1)
03410 Base excision repair
136347886 (Gnf1)
03420 Nucleotide excision repair
136347886 (Gnf1)
03430 Mismatch repair
136347886 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efor03032
]
136347886 (Gnf1)
03400 DNA repair and recombination proteins [BR:
efor03400
]
136347886 (Gnf1)
DNA replication proteins [BR:
efor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
136347886 (Gnf1)
DNA repair and recombination proteins [BR:
efor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
136347886 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
BRCT
AAA_30
Rad17
AAA_22
AAA_14
AAA_18
RuvB_N
AAA_17
AAA_5
nSTAND3
TIP49
RNA_helicase
AAA_16
PTCB-BRCT
AAA_33
NTPase_1
AAA_6
AAA_assoc_2
Motif
Other DBs
NCBI-GeneID:
136347886
NCBI-ProteinID:
XP_066154359
LinkDB
All DBs
Position
30:complement(2058048..2062538)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSKDIRSFFTVLSKKPGSILNNPKPKQLIDSDDEDIIESTPEKPQKKTSLKRRVQVLNSD
SEEERAPSTSSTKKPKKTLKLQKDSKTKLKLINLESLQKPIEQSEVKYVAKTVEESKDNK
AVKAKKKSKKGKQPEISVHDDKNFGKTLEDLDDSNDTILLDNLDFLDKTIDEAQVSSDSN
ENENHSLLEVQPKETKSHKSINTNKERTGSDDKTTPKKSAKRTRKLSESTPTSSKKQKLE
HTDSGVDPDSEKTQRKKHSTELYISYLHRAGPKHHGEKEYPKGKPDCLKNLTFLRTGVLD
SLEGEEFGNLVTGHGGRVVQSVSKKVNYVVLGDEPGPAKLEKARRYNIPELTEDQFLDMI
LVKSGEKPRYAVLKSESEDWGLGSFEEGSVKTDEILAVDEDNQKANNTIFNEEIVNKSLS
SEKTPKEENKDKKLLIEAKKESKNISISNGHENTLKSSIYQENLSWTDKYKPTNMKGIIG
QQDPNSNMYKLKKWLENWFKNVDPERRKTLPKPTLYNQHDGAYFRAALLSGPPGVGKTTT
ATLVSKELGFDIVEFNASDTRNKKLLHEEISHMMRSKTVAGFASGHKNINQKRVLLMDEV
DGMAGNEDRGGIAELINFIKTASFPIICMCNNRDLPKMRTLVNHCFALKFGKPNIMQIRG
AMMTICFKEGLTIKPEALAQLITGTGNDIRQTLNHLSMWSAAEKNLSSETVQKESKNSQK
DVVFGAWDVIRKVFNKSDNKDMTLADKARLFFYDYSFGPLFVQENYLTVNPECTGPKAVQ
PIEMLIRRHLTADSLSESDIIERKIRSTNNWSLLESQAYFSTVLPSHYLSGTMGQVRFPG
WFGKNSQRNKSLRIVGEIYTHSRTAISGDKLSVRLDYAEPLKNHLLHPLIEKKTAGIDDT
LGVMKAYSLLRDDLTNLCDLMTGLATKHANPFDAVSSSVKAALTRKYNKVMVLSIAPPTA
AKKKKSAKLEQEDVFEEDEEGSDGDQDEDNVDDDGLIKQVKNPKAGSSKSGAPEKQKKGG
QRSKTNEKRPRK
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaggatatccgttcgtttttcacggttctctctaaaaaaccgggcagcatctta
aacaacccaaaaccaaagcagctaatagactcagatgatgaagatatcatagaaagtact
cctgagaaacctcaaaaaaagacctcattgaaacgaagagttcaagttcttaactcagat
tctgaagaggagcgtgcaccatctacttcttccactaaaaagccaaaaaaaactttaaaa
cttcagaaagattcaaaaacaaagttgaaactcataaatttagaaagtcttcagaaaccg
atagaacagagtgaggtgaagtatgtggcaaaaactgtggaagaatctaaagataataaa
gcagtaaaggcaaaaaagaagagtaagaagggaaaacaacctgaaatcagtgtccatgat
gacaagaactttggcaaaaccttggaagaccttgatgatagtaatgatacaattcttctt
gataatttagactttttggataaaaccattgatgaagcccaagtcagttcagatagtaat
gaaaatgaaaatcatagcttactagaagtgcaaccaaaagaaacaaaaagtcacaaatca
attaatacaaataaggagagaactggatctgatgataagaccactccaaaaaaatcagca
aaaaggactagaaaactttcagaatcaacacctacatcaagcaaaaaacagaaactagag
cacacagattcaggagttgatccagactctgaaaagacacaaaggaagaaacattctaca
gagttatatatttcataccttcatagagctggcccaaaacatcatggtgaaaaggagtat
cccaaaggaaaaccagattgtttaaaaaatttaacattcctaagaacgggagtattagat
tccttagaaggtgaggagtttgggaatttggtcactggccatggtggaagggttgttcaa
tccgtgtccaaaaaagtcaactatgtggtgcttggtgatgaaccaggaccagccaaatta
gaaaaggccaggcggtacaatataccagaattaactgaagatcaatttctcgatatgatt
ctagtaaagtctggtgaaaaacctagatatgcagtgctgaagtctgagtcagaggattgg
ggtcttggcagctttgaagaaggttctgtgaaaactgatgaaattttagcagtggatgaa
gataaccaaaaagcaaataatacaatattcaatgaggaaattgtcaataaatctttgagc
agtgaaaaaactcccaaagaagagaacaaagacaaaaaactattaattgaggctaaaaaa
gaatctaaaaatatctccatttcaaatggacatgaaaacacattaaaatcaagtatttat
caggaaaacttgtcttggactgataagtacaagcccacaaacatgaaagggattataggg
caacaagatccgaacagcaacatgtataaactgaaaaaatggctggaaaattggtttaaa
aatgtagacccagaaaggaggaaaactctacccaaaccaaccctatataaccaacatgat
ggggcttatttcagggcggccctcttaagtggccctccaggcgtcggcaaaaccactact
gccacgttagtaagcaaagaactgggctttgatattgttgaatttaatgcctcagatact
agaaataaaaagctgttacacgaggaaatctctcatatgatgaggtcaaaaactgttgcc
ggattcgcttcaggtcataaaaacataaaccaaaaaagagtattgttgatggatgaagta
gacggaatggcggggaatgaagatcgagggggaattgccgagttgattaatttcattaaa
accgccagttttcctattatttgcatgtgcaacaacagagatttgcccaagatgagaacc
ctagttaatcactgtttcgccctcaaattcggaaagcccaatatcatgcaaattcggggc
gcaatgatgacgatttgttttaaagaaggcttgaccatcaaaccggaagcgttagctcaa
ttaattaccggtactggcaatgatatacgtcaaactttgaatcacctttcgatgtggtct
gcggcagaaaaaaatctgtcatcagaaaccgttcaaaaagagtcgaaaaattcgcaaaaa
gacgtagttttcggtgcctgggatgttatccgcaaagtcttcaacaagagtgataataaa
gatatgacactggcagacaaggcgagattgtttttctacgattatagctttgggcccttg
ttcgtgcaagagaattacttgactgtaaatcccgaatgtacaggacctaaagcagtgcaa
ccaatagaaatgttgattagacgacacttgaccgcggacagtttgagtgaaagcgacata
atcgagcgcaaaattcgcagcaccaacaattggtcactgctcgaaagtcaggcatatttt
agcacagtactaccgagccactatttgtcagggacgatggggcaagtacggtttcccggc
tggttcgggaaaaattcccagaggaataaaagtttgagaattgtgggggaaatttatact
cattcgagaacggccatttcaggcgataaactttcagtgcggttggactacgcagaacct
ctaaaaaatcacttgttacatccactgatagagaaaaaaactgcgggtatagacgatact
ttaggagtcatgaaagcatattctttactgagggatgatttaaccaacctttgcgatcta
atgaccggtcttgctacgaagcatgccaacccttttgatgccgtttcttcgagcgtcaaa
gctgcgttgactcgcaaatataacaaagtcatggtgttgagcatcgctccaccgaccgcc
gccaaaaagaaaaaatctgccaaattggagcaagaggatgtttttgaagaggatgaagaa
ggttcagatggcgatcaagatgaggataatgtagatgatgatggtttaatcaagcaggta
aaaaatccgaaagccggaagtagcaagtccggggctcctgagaaacaaaaaaaaggaggg
caacgcagtaaaactaacgaaaaacgacccagaaaataa
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