Euwallacea fornicatus (polyphagous shot-hole borer): 136348805
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Entry
136348805 CDS
T10685
Symbol
fand
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136348805 (fand)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efor03019
]
136348805 (fand)
03041 Spliceosome [BR:
efor03041
]
136348805 (fand)
Messenger RNA biogenesis [BR:
efor03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
136348805 (fand)
Spliceosome [BR:
efor03041
]
Complex B
Other components
Prp19-related factors
136348805 (fand)
Complex C
136348805 (fand)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
Mad3_BUB1_I
TPR_2
TPR_12
TPR_15
NRDE-2
TPR_10
PPR
RPN7
TPR_7
Mad3_BUB1_I_2
TPR_1
Tcf25
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
136348805
NCBI-ProteinID:
XP_066156047
LinkDB
All DBs
Position
35:complement(1519071..1522798)
Genome browser
AA seq
849 aa
AA seq
DB search
MPISGPSACDTAKQLDIIFTEEDLPYEEEILRNPYSVKHWIRYIDHKKKAPKQGVNLIYE
RALKELPGSYKLWYNYLRTRRQQVKNRCITDPGYEEVNNAFERSLVFMHKMPRIWMDYCT
FLTDQNKITRTRKVFDRALRALPVTQHHRIWPLYLGFVKKHNILETGVRVFRRYMKLFPE
NAEDYVEYLTEAGRLDEAALVLAKIVNDENFVSQNGKSKHQLWNELCELISNNPDKVHSL
NVDAIIRGGLRRYTDQLGHLWNSLANYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDA
YAQFEELSLSKRMEEVSKLTKPSDDDNVDLELRLARFENLMERRLLLLNSVLLRQNPHNV
SQWHKRVQLYEGKPHDIINTYTEAVQTVKPKLAVGKLHTLWVEFAKFYEKNGQIEDARLI
FQKGTEVEYVKVDDLASVWCEWTEMEIRNENYEESLKLMHRATVLPARKVAYHDESETVQ
SRLYKSLKVWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGVFLEENNYFEEA
FRAYEKGISLFKWPNVYDIWNTYLSKFLKRYEGSKIERARDLFEQCLEHCPQQFAKHLYL
LYAKLEEEHGMARHAMAVYEKATKAVPEKEMLEVFNIYIKKAAEIYGIPKTRQIYEKAIE
VLPEGDTRDMCLRFADMETKLGEIDRARAIYAHCSQICDPRVTTEFWQTWKEFEVRHGNE
DTMREMLRIKRSVQATYNTQVNMMSAQMLSSAGTLTGTTADLAPGEKDGMRLLEAKAAEM
AGSANAGQRPGNIMFVRGETQGDKKDKVVNPDEIDIDNDDEEDEVGEDLEQQSVPAEVFG
SLKKPDQEN
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaattagtggtcccagtgcctgtgataccgcaaaacaattggatataatctttact
gaagaagatttaccctacgaagaagaaatcctcagaaacccttattcagtcaaacattgg
atccgatatatagatcataagaagaaagctccaaaacaaggtgtgaatctaatctatgag
cgtgctcttaaagaacttcctggttcttataagttatggtacaactatttgcgaaccaga
agacaacaagtaaaaaacaggtgcattactgaccccggatatgaagaagttaataatgct
tttgaaaggtcgttggtttttatgcataaaatgcctagaatttggatggattattgcacc
ttcttaacagaccaaaacaaaataacccgaactcgaaaggtttttgacagagccttaaga
gctctaccagtcacccagcaccatcgcatctggcctctatatttgggctttgtgaagaaa
cacaatatcctggaaacgggcgttcgagtatttaggagatacatgaagttatttcctgaa
aatgctgaagactatgtggaatatctaacagaagctgggaggttggatgaagcagcattg
gtccttgctaaaattgtcaatgacgagaacttcgtgtcacaaaatgggaaatccaagcat
cagctctggaatgagttatgtgaattgatttctaataatcctgataaggtgcattctcta
aatgtagatgcaattattcgaggaggtttaaggcgttatactgatcagctgggtcatcta
tggaactctcttgctaactattatgtgaggagtggtttgtttgacagggcccgagatata
tatgaagaagcaattcaaactgtcaccactgtcagggattttactcaagtgtttgatgct
tatgcccagtttgaagagttgagtttgagcaaacgcatggaagaagtatctaaattgact
aaaccttcagacgatgataatgttgatttggaactgcgattagccagatttgagaatttg
atggagaggagattactacttttaaactctgtgttactgcgacaaaacccacataatgtt
tctcaatggcataagagagtgcaattgtatgaaggaaagcctcatgatattattaatact
tatactgaagctgtgcagactgtcaagcctaaacttgcagtgggtaaacttcacaccctc
tgggtggagtttgccaagttttacgaaaaaaatggccaaattgaagacgcgagattgatt
tttcaaaaaggaactgaagtcgagtatgttaaggttgacgaccttgcttcagtttggtgc
gaatggaccgaaatggaaatcagaaatgagaattacgaggagtctcttaagctcatgcat
cgggccacagttctccccgccagaaaagtagcttatcatgatgagtctgaaactgttcaa
tcaagattgtacaagtccttgaaagtctggtctatgtatgctgatctcgaagagagtttc
ggtacgttcaagtcctgcaaagcagtctatgatcgaattattgacctgaagattgcgacc
ccacaaataatcatcaactacggagtattcctggaggaaaataattacttcgaagaagct
tttcgagcttacgaaaagggaatttccttattcaaatggcctaatgtctacgacatttgg
aacacgtatttatcaaagtttttaaagcggtacgagggatcgaagattgaaagggccaga
gatttatttgagcaatgtttggagcattgtcctcagcaatttgctaaacatttgtattta
ctctacgcgaaattggaagaggagcatggcatggcgagacacgcaatggcggtttatgag
aaggcgaccaaggcggtaccagaaaaagaaatgttggaagtatttaatatttacattaaa
aaagcagctgaaatttatggcattccaaagacaaggcaaatttatgaaaaggccattgaa
gtcttgcctgaaggtgatacaagggatatgtgtttaaggtttgcagacatggagactaaa
ctgggagaaattgatagggcccgcgcgatatatgctcactgcagccaaatctgcgaccct
agagttaccacagagttttggcagacttggaaggaattcgaagttcgacacggaaatgaa
gacactatgagagaaatgttgcgtataaaacgaagcgtgcaagccacttacaacactcag
gtgaatatgatgtccgcgcaaatgttgagctcagctggaactctaactggaacaactgct
gatttagcacctggcgaaaaagatgggatgcgcttgttggaggcaaaagctgcagaaatg
gctggatctgcgaacgctggtcagagacccggcaacattatgtttgtgcgcggtgagaca
caaggagacaagaaggataaagttgttaatcctgatgaaatcgatattgacaatgatgac
gaagaagacgaggtaggagaggatttagaacagcaatctgttccagcggaggtgtttggg
agtctgaaaaagccagatcaagaaaactga
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