Euwallacea fornicatus (polyphagous shot-hole borer): 136349343
Help
Entry
136349343 CDS
T10685
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03030
DNA replication
efor03410
Base excision repair
efor03420
Nucleotide excision repair
efor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
136349343 (DNAlig1)
03410 Base excision repair
136349343 (DNAlig1)
03420 Nucleotide excision repair
136349343 (DNAlig1)
03430 Mismatch repair
136349343 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efor03032
]
136349343 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
efor03400
]
136349343 (DNAlig1)
Enzymes [BR:
efor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
136349343 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
136349343 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
136349343 (DNAlig1)
DNA replication proteins [BR:
efor03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
136349343 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
136349343 (DNAlig1)
DNA repair and recombination proteins [BR:
efor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
136349343 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
136349343 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
136349343 (DNAlig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
FERM_N_2
Motif
Other DBs
NCBI-GeneID:
136349343
NCBI-ProteinID:
XP_066156930
LinkDB
All DBs
Position
37:226783..230454
Genome browser
AA seq
831 aa
AA seq
DB search
MQNIRRFVSIVRFSSEINFLWVNISSNIPCHSGSNIVFKKYLYSSPKQPKRSRQLSSSED
EVAEVTKKSRKSAEKVAQLKSPKNEGKSPIIKTENGDVCKKRRSRRISSSEDESKIPSPV
KNKKKEKPTKTDENPSPNKLLKSENNENDTVLEERHNRTEKKVIFGKSSEGIGQKQSYNP
KSSKYDPIKDATWKKSENVPYSALARTLEIIEEVSARLKMIEILSNFFRSVIVLTPEDLL
PSIYLCLNKIAPAYKGIELGVAETSLMKAIAQSTGRTVNQIKSDAQQSGDLGIVAEQSKS
NQRMIFKPARLTVKGVFNKLKEIAQMTGHASQTKKVEKIQSMFVACQGSEARFLIRSLHG
KLRIGLAEQSALQALALACAMTPPNQDYPPKELDASKGRSAEGFKADVDRMALILKTAYC
ECPNYEMIIPVLLQEGIDMLPEKCKLTPGIPLKPMLAHPTKGVQEVLQRFEGMTFTCEWK
YDGERAQIHIHKKDISIFSRNQENNTSKYPDIISRLDKCMSESVDSCILDCEAVAWDREK
RQILPFQILSTRKRKDANESDIKVQVCVFMFDLLYLNGEPLIKRPFKERRELLKEHFKEQ
EGEWLFAKCLDTTKMEEVQEFLEESVKGNCEGLMVKTLEQDSSYEIAKRSRKWLKLKKDY
LEGVGDTLDVVVIGGYLGKGKRTGTYGGFLLACYDKECDEYQSICKIGTGFSDEDLQTHT
EFFKNQVISTAKVYYRYDSSLEPDHWFEPVQVWEIKCADLSLSPVHRAALGIVDPEKGIS
LRFPRFIRIREDKGVENATSAQQVASMYSNQDQVKNQQSESGGKFADEDFY
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatatccgtagattcgtatcaatagttagattctcctctgagataaatttcttg
tgggtcaatatttcttcaaatattccttgtcatagtggcagtaacattgtgtttaaaaaa
tatctatacagttcaccgaagcaaccaaaaagatcccgacaattatccagtagtgaagat
gaagttgcagaagtgacaaaaaaaagcaggaaatctgcagagaaagtggcacaattaaag
tctcctaaaaacgaaggtaagtcgccgatcataaagacagaaaatggtgatgtctgcaaa
aaaaggaggtcacgacgtatatctagcagtgaggatgaaagcaagatcccaagcccagtt
aaaaataaaaaaaaagaaaaacctactaaaacagatgaaaatccatcaccaaataaactt
ctaaaatctgagaataatgaaaatgacactgtgttagaggagagacataataggactgaa
aaaaaggttatttttggaaaatcttcagaaggcattgggcagaaacagagctataaccca
aaatcctctaagtatgacccaatcaaagatgccacttggaagaaaagtgaaaatgtacca
tacagtgccttggcaagaaccttggaaatcatagaagaagtttcagcaagactaaaaatg
attgaaattttaagcaactttttccgatcagtaattgttctgactcctgaagacttactc
cccagcatctatttgtgtttaaacaaaatagctccagcttacaaaggaattgagttgggt
gtagcagaaacaagcctcatgaaagccattgcacaatccactgggagaactgtgaatcaa
attaaaagtgatgctcagcaaagtggtgacttgggcattgttgctgagcaatccaaatcc
aaccagagaatgatttttaagcctgccagattgaccgttaaaggggttttcaataagctt
aaagaaattgctcagatgacgggacatgcttcccagacgaagaaagtggaaaaaatccaa
tcaatgtttgtcgcctgtcaaggctctgaagctcgcttcctcatccgttctctccatgga
aagctacgcattggattagctgagcaatcagcactacaagctctcgccttggcctgcgcg
atgactccgcccaatcaggactatcctcccaaggaattggacgcctctaaaggtcgatct
gcagaaggtttcaaggctgacgttgaccggatggcgttgatattaaagaccgcctattgt
gaatgccccaattatgagatgatcattccggtactgttgcaagagggaattgacatgtta
ccagagaagtgcaagttgacgcctgggattcctttgaaaccgatgttggcgcatcccacg
aaaggcgttcaggaagttttgcaacgtttcgagggcatgacctttacttgcgaatggaag
tatgacggcgaaagggcccaaatccacattcacaaaaaggatatttcaatattcagtcgt
aatcaggaaaacaatacctcaaaatacccggatattatttcgcgattggataaatgcatg
tcagaaagtgtggattcgtgcatcttggactgcgaagcagtggcatgggatcgggaaaag
cggcaaattttgccattccaaatattgagtaccaggaaaagaaaggacgctaatgaatcg
gatataaaagtacaagtttgcgtgtttatgttcgatttactgtatctcaacggagaacca
ctaataaaaaggccctttaaagagcgtagagaactactcaaagaacattttaaagagcaa
gagggtgaatggctttttgccaagtgcctagacacaactaaaatggaggaagtgcaggaa
tttctggaagaaagcgttaaaggtaactgtgagggtctcatggtcaaaaccctggaacag
gattcgagttacgaaatagccaagagatctcgaaaatggctgaaactgaaaaaagactat
ttagagggggtgggggatacactggatgtggttgttatagggggttatttgggaaaaggg
aaaaggaccggcacttacgggggatttttactcgcctgctatgataaagaatgtgatgag
tatcagagtatttgcaagattggtacaggatttagcgacgaagacttgcaaacacacacg
gaattcttcaaaaaccaagtgatttccaccgctaaggtctactacagatatgacagctcc
ttagagcccgatcattggttcgaaccagttcaagtgtgggaaattaaatgcgccgatttg
tctttgtctccggtgcacagagcagctttagggatcgtcgacccggaaaagggaatttcc
ttgagattccctagattcatccgcataagggaagataaaggagtagaaaatgccacctcc
gcccagcaagtggcttccatgtactccaatcaggaccaagtgaagaaccaacaatctgag
agcggaggtaagtttgctgatgaggatttttattaa
DBGET
integrated database retrieval system
