Euwallacea fornicatus (polyphagous shot-hole borer): 136350847
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Entry
136350847 CDS
T10685
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
efor Euwallacea fornicatus (polyphagous shot-hole borer)
Pathway
efor03440
Homologous recombination
efor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
efor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
136350847 (rad50)
03450 Non-homologous end-joining
136350847 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efor03032
]
136350847 (rad50)
03400 DNA repair and recombination proteins [BR:
efor03400
]
136350847 (rad50)
DNA replication proteins [BR:
efor03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
136350847 (rad50)
DNA repair and recombination proteins [BR:
efor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
136350847 (rad50)
BRCA1-C complex
136350847 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
136350847 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
Rad50_zn_hook
AAA_15
SbcC_Walker_B
AAA_21
AAA_29
CC2-LZ
BLOC1_2
ABC_tran
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
136350847
NCBI-ProteinID:
XP_066159048
LinkDB
All DBs
Position
4:1958123..1963442
Genome browser
AA seq
1323 aa
AA seq
DB search
MALLDKVSIRGIRSFGPDTDQRVKFSTPLTLILGQNGCGKTTILESLKYALTSDLPAGTE
NGRGFINDPKLSNHAGTKASIKLKFKDSSNNFITVAKFLEVTTKAGGKIIFKSTNPAIRW
EDADGNMRDIGNRCVDIDMYCCQKLNVSKAIINNVIFCHQENSAWPLDEPKKLKEKFDDI
FGSTEYNKCVEKLRKLIKIKSDDIKLLKEQVQQKELNKRNTERLREDLTNNELKLKALQE
LVQEKHNEIQPLEEKLEEINILVESFVAVQQEKATLETKLKGIQEQQENLKEHIVNEFEG
SDDDLNSEILNFDAFQDNINEEIAKKEKMKTVIDLKVQEINKLIQNHQMSFGKLKEEEAQ
QLKRCGEMKDLIEKTTVKYKIVVEEGETSNEFIYKLKNIRSGQELLYKNYQKDMERTEEL
KQTAINNVRIQLASAEETFSVNNKQIADTKEKIRDTKTKLGKLERYKAQLEIIDKNVDEM
KQLLAKQEADFDENLELQQLEELDDDINKKDSEQTKLDREYKVLHQNSITEQKIVAEKVA
VAEKQAEISSLRQKHEEDFDLLFGQNFPEDKYESAVLQIQKQQEETVRSLSKDVANCDKK
ITNLEATTIHINDKLRQHREELDRNKTKVENTCKGNNFSELLERTFNRREKFQREKGAFR
SAKTLFEQFISEFQQNSPCCPVCLTDFSSNKSAVPGVITTLKAKIEDLPHKIVETDSNLK
REEELYNKLQQLKPVSEMIERLEKQTIPELEKELHNVKESLVDAKLELAALQNDLLEPKN
IVEKCIKVISDAVLLDRLDQEIKRSEQVKETLSKDLVKVSSNRTLIDTETELSRVKSELA
NLRRLHKVKQTSYNETKRTIQRLCSQMQTGMQKKLEAEKVVQERPLLDKQISEYRTIVSE
MEKNHKDLPDKISALKNELSRLLRERAEMVASNKTKLEKIRADIEECRRYIDETEKLRDV
IEQYEQQGKKEELERILQELGKRKNSISKLDDSTKILNEAIMKNKEELASQEIRLRYLRD
NKELREKRVESEALQRKYQELNRKTHNNSIIEERKKVRAEIDVKNTEINKKTGEMTGYQE
IVRTRKAELNMKEHRESAMEHKLKYFELKTQILAVADLRKYTEVLEKSILKFHQERMVQI
NTAIRELWRDIYKGNDIDYVEIKTVDEVRGNATSLIYYYVSNTHKTIVTRYFTLGVTKRS
YTYSVVQVKKGVELEMRGRCSAGQRVLACLVIRMALAETFSTNCGILALDEPTTNLDRDN
IMSLSDVLSRIITMRQKQKNFQLLIITHDEEFLQALVRDQSISRYQKVERNAEGFSEIKT
EII
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggctttattagacaaggtgagcattagaggcatcagaagtttcggtcccgacacagac
caacgtgttaagttttcaacccctttaactttaattcttggtcagaatggttgtgggaaa
actaccattttggagtccctcaaatatgcattaactagcgatttgccagcaggaactgaa
aatggtcgaggattcatcaatgatccaaaattatctaatcatgctgggacaaaagctagc
attaagttaaaatttaaagactccagcaataactttataactgttgccaaatttctggaa
gtaacgactaaggctggtggcaagataatattcaaaagtacaaacccagcaattagatgg
gaggatgcggatgggaacatgcgagatattggaaacaggtgcgtcgatatagacatgtat
tgctgtcagaagttgaatgtttcaaaagcaataataaacaatgtcatattttgccaccaa
gaaaattccgcctggcctttagatgagccaaaaaagcttaaagaaaagtttgatgacata
tttggatctactgaatataacaaatgtgtcgagaagcttagaaagcttattaagataaag
tctgatgacattaagcttttaaaagagcaagtccaacaaaaggaactgaataaaagaaat
actgaaagattaagagaggatttaacaaataatgagctgaagttaaaggccctccaagaa
ctagttcaagagaaacacaatgaaattcagcctctagaggagaaacttgaggagataaat
atcctcgtcgagtcctttgtggcagttcagcaagaaaaggctactttagagacaaaatta
aaaggcattcaggagcaacaagaaaatttaaaggaacatatagtgaacgagtttgagggc
tcagatgacgacttaaatagtgagatattaaacttcgacgcattccaagataacattaat
gaagaaattgccaaaaaggaaaaaatgaaaactgttattgatttgaaagtacaagaaatt
aacaagctgattcaaaatcaccaaatgtcctttgggaagctgaaagaagaagaagctcag
cagttgaagagatgcggtgaaatgaaagacctcatcgaaaagactactgtcaaatataaa
atcgttgttgaagaaggcgaaacctccaatgaatttatttataagttgaaaaatatcaga
tcaggacaagaattgctttataaaaattatcaaaaggatatggaaagaacggaggaactc
aagcaaacagccattaataatgttcgaattcagttggcctcggccgaagaaactttttca
gtaaataacaagcagatcgcggatacgaaggaaaaaattcgggatacaaaaacaaaattg
ggtaaattagaacgttataaggcccagttggaaatcatagacaaaaatgtggatgaaatg
aagcaacttttagccaagcaagaagcggactttgacgaaaatctagaactgcaacaatta
gaggaactggacgatgatattaacaaaaaagattcggaacaaactaaattagatcgcgaa
tacaaagttttgcatcagaattccatcaccgagcaaaagatcgttgccgaaaaagtcgcc
gtggctgaaaaacaagcggaaatctcaagtctaaggcaaaaacatgaagaagatttcgat
cttctattcgggcaaaacttcccggaagacaaatacgaatcggcggttttgcaaattcaa
aaacaacaagaagaaacagtgagatcgttatctaaagacgttgctaattgcgataagaaa
atcaccaaccttgaagcaacaacgatacacattaacgataagttgcgacagcatagagaa
gagctggatcgcaataagactaaagtggaaaacacctgtaaaggtaacaatttttcggaa
ttactggagcggacgtttaatagaagagaaaaatttcagcgcgaaaaaggagcttttcga
tccgctaaaactttattcgaacagttcatcagtgaattccagcagaattctccctgttgt
cccgtttgtttgaccgacttttcctccaacaaatccgcagtgcctggcgttatcaccacg
ctgaaagcaaaaatcgaggatttgcctcacaagatagtcgagactgactccaacttgaag
agagaggaagagttgtataacaaactgcaacaactgaagcccgtcagcgaaatgatagaa
aggttagaaaagcaaaccattccggaattggaaaaagaattacacaacgttaaggaaagc
ctggttgatgccaagctagagctagccgcgctgcaaaatgacttattagagccgaaaaat
atcgttgaaaaatgtataaaagtgatatcagacgcggttttgctcgaccgtctggatcag
gaaattaaaagaagtgaacaagtcaaggaaactttatcaaaggatttggtgaaggtgtct
tcgaatcgcactctaattgacaccgaaactgaactgtctcgagttaaatctgaactagca
aatcttagaaggttgcacaaggtcaaacagacctcatacaatgaaacaaagaggactatc
cagagactgtgcagtcaaatgcaaacggggatgcagaagaagttggaagccgagaaggtg
gttcaagaacggcctttgctagataaacaaatctctgaatatagaactatcgtttctgaa
atggagaaaaatcacaaagacctaccagataaaatatctgccttgaaaaatgagctaagc
aggttgctcagggaacgtgcagaaatggttgcgagcaataaaacaaagctagaaaagatt
cgtgctgacatcgaagagtgcaggcgctatatcgatgaaactgagaaactccgcgatgtt
attgagcagtacgaacaacaagggaaaaaagaagagctggaaagaatacttcaagaactt
gggaaacgtaaaaatagcatttctaaattagacgattcgacgaaaattctgaatgaggcc
ataatgaaaaataaggaagaattggccagtcaggagattcggttgcggtacctcagagat
aacaaggaactgcgggagaagagagtggaaagtgaagctttgcagagaaagtaccaagaa
ttgaacaggaagacacacaataattccattattgaggaacgcaagaaagtgagggctgaa
attgatgtcaaaaacacggagatcaacaagaagaccggagaaatgactggttaccaagaa
atagtaagaaccagaaaagcagaattaaacatgaaagaacacagagagtcggcgatggaa
cacaagctgaagtacttcgaattaaaaactcaaattttggctgtcgcagatttgagaaag
tacaccgaagttctggaaaaatccattctgaaattccatcaagaaaggatggttcaaatt
aatacggcgattagggaactgtggcgagacatttataaaggaaacgacatcgactacgtt
gaaattaagactgtggatgaagttagaggtaacgcaacttcacttatatattattacgta
tcaaatacacataaaaccattgttactcgctattttacgctaggagtgaccaagagaagc
tacacctacagcgtggtacaagtcaaaaaaggagtcgaactggaaatgagaggcaggtgc
agtgccggtcagagagtgttggcttgtcttgtgatccgtatggctttggcagagactttc
agcaccaactgcgggatcttggctcttgatgaacccaccaccaacttagatagggacaat
atcatgagcttaagcgacgtcctgtccaggattatcacaatgcggcaaaagcaaaagaat
ttccagctgttaatcattactcacgacgaggaatttttgcaggctttagtcagggatcaa
agcatttcgcggtatcagaaggttgaaagaaatgccgagggcttctcagaaattaaaacg
gaaatcatttga
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integrated database retrieval system
