Enterococcus faecalis ATCC 29212: DR75_2279
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Entry
DR75_2279 CDS
T03320
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efq
Enterococcus faecalis ATCC 29212
Pathway
efq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DR75_2279 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efq03400
]
DR75_2279 (mfd)
Enzymes [BR:
efq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DR75_2279 (mfd)
DNA repair and recombination proteins [BR:
efq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DR75_2279 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AIL03851
LinkDB
All DBs
Position
2336508..2340047
Genome browser
AA seq
1179 aa
AA seq
DB search
MNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQKIVIAVPNLY
YANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLMTANAGIVVVP
VAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKPGEFSIRGSIV
DVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVFSKADMNHGMM
RLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLYQQKTTLLDYL
PENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHDQLRKTARNTT
FFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVVVFVPTKERIQ
KVEELFQDFDIPSVVSNWDQLLDWHVQIVQGALQTGFELPKNKLVAITEKEIFHTTTKKR
ARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYMTILYQNDDKL
FIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLILLYATRESEK
GYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGDVGFGKTEVAL
RAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTKKQQNETIEKI
KHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQVDVLTLTATPI
PRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARDGQVFYLYNRV
DTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTTIIETGVDIPN
ANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTEL
GSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVE
IDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEYPDEVAHLLTT
GRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKADLAVEKEQMT
ISLKLPKDCKEAVWIQEIAAFTTALRQEKYKHSQETDSL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattatcgaacgaattagccaaacagaaattgctaaatcatggcgcagtcaacta
atgacaacaggaacgcgccaactaattactgggttatcaggctctgctaaaacattactg
atggcaggcgctttacaaaagacgcatcaaaaaattgttattgcggttccaaacctatac
tatgccaatcaattagtagatgattttttaaatattttaccttcagaacaagttcatcta
tttccagtagatgaagtgttatccgccgaaatggccttttcttcaccagaagcgcgcgca
gatcgagtgagtgcgttaaatttcctgatgacagcgaatgcaggaatcgtggtcgtacca
gtagctggactacgaaagtatttgccaacgaaagaaacgtggcaaaatgcgcaacttcat
tgggaaatcgggacagaagtagaacctgagatcctcgcgcaacgcttagtgttaatgggc
tatgaacgccaatcgatggtcggaaagcctggcgaatttagtattcgcggaagcattgtt
gatgtctatccgctaaatgccgaataccctgttcgggtggaactgtttgatgttgaaatt
gactcaatccgttatttcgaagcagatacccaacgttcattagaaaatcttgaagaagta
acgatttcaccaatgactgatttagtattctcaaaggcagatatgaatcatggcatgatg
aggttacaagatgctctagaaaaacgtttagcgacagctaaagatcaaacagagaccgat
tttttagaagaatattttggtcagttgctgtcttcttgggaacaagggattcctacagaa
aatgctcactattatacagattttctgtaccaacaaaagactacgctgttagattattta
ccagaaaatagtttgctttttgtggatgattattctcgtatgatggaaacggagcgagaa
atcgctagagaggaagcggaatggcaaaccctgaaaattgaagaaatgcgcgtgttttct
gaacaaacttttggcgtagactttcatgatcaattgcgaaaaactgcacgaaatacgacc
ttcttttcactttttcaaaaagggatggggaatcttcgtttccaagaagtccataatttc
caatatcgttcaatgcaacaattcttcggtcaaatgccgttgctaaaagcggaagtggac
cgttggcaaaagcaaaaccaaacggttgttgtttttgttcctacgaaagaacggattcaa
aaagtcgaagagctatttcaggactttgacatacctagcgtagtaagcaattgggatcag
ttgttagattggcatgtccaaattgtccaaggggcattacaaacagggtttgaattgcct
aaaaacaagctcgtggcgattacggaaaaagaaatttttcatacaacgaccaaaaaacgg
gcacgtcgtcaaacaatctctaatgcggaacgtttgaaaagttatagcgacttaaaaacg
ggcgattatgtcgttcatgcgaatcacgggattggtaaatatattggtatggaaacctta
gaagttgatggggtccatcaagattacatgactatcttgtaccaaaatgatgacaagtta
tttattccagtaacacaattgaacttgattcaaaagttcgttgcttccgagtctaaaacg
ccgaaaattaacaagctaggcggcagtgaatggacgaaaaccaaacgaaaagttgcttcg
aaaattgaagatatcgcggatgatttaatcttactttatgcgacaagagaatcggaaaaa
ggctatgcttttccgccagatgatgcgtatcaaaaagaatttgaagaggcttttccgtat
tctgaaacagatgatcaattacgtagtgctgccgaaattaaacacgacatggaaaaatct
cgaccaatggatcgtttgttagttggcgatgtagggtttggtaaaacagaagtggcttta
cgagcggctttcaaagctgttagcaacaataaacaggttgcctttttagtgccaacaact
attttagcgcaacaacattacgaaacgattcaagagcggtttgagggctttcctgtagaa
attggtttattaagtcgtttccgcacgaaaaaacagcaaaatgaaacaattgaaaaaatt
aaacatggccaagtagatattgtgattggtacccatcgtttattgtcgcaagatattaat
tttagtgatttaggcttgttgattattgatgaggaacaacggtttggagtgaaacataaa
gaacgactaaaacaattgcgttcacaagtggatgtcttgacgttaacagcaacgccaatc
ccaaggacccttcatatgtcgatgttaggtgtccgtgatttatccgtcatcgaaacccca
ccagagaatcgttatccgatccaaacgtatgtcatggaaaataatcctggggcgattcgg
gaagcgattgagcgagaaatggcccgagatggtcaagtcttttatttatacaatcgagta
gatacgattgaacgaaaagttgaagagttacaagcactagttccagatgcacgaattgcg
tatgcacatggtcaaatgacagaagtacaactggagaatactttgtttgattttattgaa
ggacaatatgatatattagtcactacaacaattattgaaacaggagtagatattcctaat
gctaataccttgtttgtagaaaatgcggactacatgggcttatctacgttgtatcaatta
cgtggtcgtgtggggcgtagcaatcgagtggcctatgcttattttatgtacgaacagcaa
aaaatcctaaacgaagttagtgagaaacgtttagaagcaattaaagactttacggaatta
ggttctgggttcaaaattgcgatgcgtgacctttccattcgaggggccggaaaccttctt
ggtgcccaacaacatggcttcattgattcggttgggtttgatatgtactcacagatgtta
tctgaggcagttgctcgtaaacaagggaaaaatatccaagaccaaaaaacgtctgttgaa
attgatttgggcattgatgcttatattccaggaacgtacattacagacgaacgacaaaaa
attgaaatttataaacggattcgtcagttagaaaatatggatatgtacgaagaattagaa
gcggacttgttagaccgctttggagagtatcctgacgaagtggcgcatttattaaccact
ggccgtatcaagatggatggcgaccgtgccttgttagaaagtattcgtaaacgcgaccaa
aaagtcaagtttgtgttaagtaaaattggcacaaaaacatactctgtggagcagttgttt
gaagcgttatcggcaaccagcttaaaagcggatctagcagttgagaaagaacaaatgact
atttccttgaagttgccgaaagattgtaaagaagctgtttggattcaagaaattgctgct
tttacaaccgcattgcgacaagaaaaatacaaacattcgcaagaaacggattccctttaa
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