Enterococcus faecalis Symbioflor 1: EFS1_2226
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Entry
EFS1_2226 CDS
T02399
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
efs
Enterococcus faecalis Symbioflor 1
Pathway
efs03030
DNA replication
efs03430
Mismatch repair
efs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
efs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EFS1_2226 (holB)
03430 Mismatch repair
EFS1_2226 (holB)
03440 Homologous recombination
EFS1_2226 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efs03032
]
EFS1_2226 (holB)
03400 DNA repair and recombination proteins [BR:
efs03400
]
EFS1_2226 (holB)
Enzymes [BR:
efs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EFS1_2226 (holB)
DNA replication proteins [BR:
efs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EFS1_2226 (holB)
DNA repair and recombination proteins [BR:
efs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EFS1_2226 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
PTHB1_hp
Inhibitor_G39P
DUF2284
TRS130_4HB
Motif
Other DBs
NCBI-ProteinID:
CCO73304
LinkDB
All DBs
Position
complement(2276674..2277624)
Genome browser
AA seq
316 aa
AA seq
DB search
MNEAQQLQQMQPLLYKQLQKSFEHGRLAHAYLFEGDTGTGKQEFGLWMAKHVFCTNLVNQ
QPCNECHNCVRINENEHPDVLRIAPDGQTIKVNQIRELKAEFSKSGVETAKKVFLIQEAD
KMSTGAANSLLKFLEEPEGQILAILETTSLSRILPTIQSRCQTLHFQPLVKKTLIDRLIK
QGIGEKTATLLAELTNSFEKAVEISQDEWFNEAREIILQWFNYLKSNDLQAFIYVQKKMV
KVFKEKEQQALSFDLLMVYYRQLLEESVATQQAKKVTEEQAERLALILKARQKWTANVSW
QNVCEQLVIQMIHPKS
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagcacaacagctacagcaaatgcaacctttgctgtacaagcaactccaaaaa
agttttgagcatggtcgtcttgcccatgcttatctttttgaaggagatacaggaactgga
aaacaagaatttggcttatggatggcgaaacatgtcttttgtacgaatttagtaaatcaa
cagccttgtaacgaatgccataattgtgtgcggattaatgaaaatgaacatccagatgtt
ttaagaattgcgccagatgggcaaaccatcaaagtgaaccaaatccgtgaattaaaagcg
gagttttctaaaagtggggtcgagactgctaaaaaagttttcttaattcaagaagcagat
aaaatgagtaccggcgcagctaatagtctcttaaaatttttagaagaaccagaaggacaa
attttagctattttagaaaccacttcgctttctcgaattttaccaacgattcaatcacga
tgccaaaccttacattttcaaccattagtcaaaaaaacattaattgatcgcttaatcaaa
caggggattggtgaaaagactgcaacccttttagctgagctgacaaatagttttgagaaa
gcagttgaaatctctcaagatgaatggtttaatgaagctagggaaatcattttgcaatgg
tttaattatctaaaaagtaatgatttacaggcatttatctacgttcagaagaaaatggtc
aaagtatttaaggaaaaagaacaacaagcgcttagctttgacttgctcatggtttattac
cgtcaattattggaagaaagtgttgcgacacagcaagccaaaaaagtaacggaagagcag
gcggaacggttggcgctaattttgaaagcacgccaaaaatggactgccaatgttagttgg
caaaatgtttgtgaacaattagttatccaaatgattcaccctaaatcataa
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