Enterococcus faecalis Symbioflor 1: EFS1_2330
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Entry
EFS1_2330 CDS
T02399
Name
(GenBank) metallo-beta-lactamase family protein / ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
efs
Enterococcus faecalis Symbioflor 1
Pathway
efs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EFS1_2330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efs03019
]
EFS1_2330
Messenger RNA biogenesis [BR:
efs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EFS1_2330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
Motif
Other DBs
NCBI-ProteinID:
CCO73408
LinkDB
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Position
2374215..2375900
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AA seq
561 aa
AA seq
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MKVNIKNNETGVFAIGGLGEIGKNTYGVQFQDEIIIIDAGIKFPEDDLLGIDYVIPDYSY
IVQNLHKVKALVITHGHEDHIGGVPYLLRQANIPIYAGPLALALITNKLDEHGLLREAEL
HEINEDTVIRFRKTAISFFRTTHSIPDALGVVVKTPSGNIVATGDFKFDFTPVGEPANLH
RMAKLGEEGVLCLLSDSTNAEIPTFTKSEKTIGTSILKIFEKIDGRIIFASFASNIFRLQ
QAADAAVKTGRKIAVFGRSMENAIVNGERLGYIKVPKGTFVDAAELNQLPANETMILCTG
SQGEPMAALSRIANGTHRQISIQPGDTVVFSSSPIPGNTTSVNRLINLLSEAGAEVIHGK
INNIHTSGHGGQEEQKLMLRLMKPKYFMPVHGEFRMLKIHASLAQDTGVPEENCFIMGNG
DVLALTADSARPAGHFNANDVYVDGNGVGDIGNVVLRDRRILSEEGLVLAVATVDIKNKE
IMAGPDILSRGFVYMRESGDMIHEGQRLLFNALREAMKDKNCTEAKLGEAMTTALQPFLF
EQTERHPMILPMIMTATVSDQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaaacataaaaaataacgaaactggcgtttttgcaatcggtggtttaggcgaa
attggaaaaaacacatatggggtacaattccaagatgaaattatcattattgatgctggg
atcaaattcccagaagatgatttacttgggattgactacgtgattccagattatagctac
atcgttcaaaatttgcataaagtcaaagcactcgttattacccacggtcatgaagaccat
attggtggcgttccttatcttttacgtcaagcgaatatcccaatctatgcgggaccacta
gccttggctttaattaccaacaaactagatgaacatggtttattgcgagaagcggaatta
cacgaaattaatgaagatacggtgattcgttttagaaaaacagcgattagctttttccgg
acgactcacagtattcctgatgccttgggcgttgtggttaaaacgccttctggtaacatt
gtcgcaacaggtgactttaagtttgactttacacccgttggcgagccagccaacttacac
agaatggcaaaattaggtgaagaaggcgttctttgtcttctttcagacagtaccaatgct
gaaatacccacctttacaaaatccgaaaaaacaattgggacctctattttaaaaatcttt
gaaaaaattgatggtcggattatctttgccagttttgcttcaaacattttccgtttacaa
caagctgctgatgcagccgtgaaaaccggtcgcaaaattgctgtttttggtcgtagcatg
gaaaatgccattgtcaatggcgaacgcttaggctacatcaaagtgccaaaaggaacgttt
gtcgatgcggcggaactgaatcaattgccagcaaatgaaacaatgattttatgtactggc
tctcaaggagaacctatggccgcgcttagtcggattgctaacggtacacatcgccaaatt
agtattcaaccaggcgatacggttgttttctcaagttcaccaattcctgggaatacgaca
agcgttaaccgtttaatcaacttattatctgaagccggtgcagaagttatccacggaaaa
atcaataatatccatacttctggtcacggtggacaagaagagcaaaaattaatgcttcgt
ttgatgaagcctaaatatttcatgcctgttcatggtgaatttagaatgttaaaaatccat
gcttcgctcgctcaagatacaggggttcctgaagaaaattgctttatcatgggcaacggc
gatgtcttagctttaacggctgatagcgcacgtcctgctggtcacttcaacgctaatgac
gtgtacgttgatggaaatggtgtcggtgatatcgggaatgttgttttacgggatcgtcgt
atcttatctgaagaaggtttagttttagcggtagcaacagttgatattaaaaataaagaa
attatggctggtccagacattctttcccgtggttttgtctacatgcgtgagtctggtgat
atgattcatgaaggccaacgtcttttattcaatgctctacgtgaagcaatgaaagataaa
aactgtaccgaagcaaaattaggcgaagccatgacgaccgctttacagcctttcttgttt
gaacaaacagaacgtcatccaatgattctgccaatgattatgactgccacagttagtgat
caataa
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