Enterococcus faecium DO: HMPREF0351_12665
Help
Entry
HMPREF0351_12665 CDS
T02120
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
efu
Enterococcus faecium DO
Pathway
efu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
efu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0351_12665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
efu03021
]
HMPREF0351_12665 (rpoC)
03400 DNA repair and recombination proteins [BR:
efu03400
]
HMPREF0351_12665 (rpoC)
Enzymes [BR:
efu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0351_12665 (rpoC)
Transcription machinery [BR:
efu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0351_12665 (rpoC)
DNA repair and recombination proteins [BR:
efu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0351_12665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
PRC
Motif
Other DBs
NCBI-ProteinID:
AFK60289
UniProt:
Q3XZQ9
LinkDB
All DBs
Position
complement(2643322..2646996)
Genome browser
AA seq
1224 aa
AA seq
DB search
MKWREPLLIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFG
PTKDWECACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSR
MGLVLDMSPRALEEIIYFASYVVIEPGNTNLEKKQLLTEREYREKREQYGQEFQAAMGAE
AIKQLLDNVDLDAEAAELKEELKSAQGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPV
IPPDLRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMY
QCGLPKEMAIELFKPFVMRELVQRELASNIKNAKRKIERQEDEVWDVLEDVIKEHPVLLN
RAPTLHRLGIQAFEPVLVQGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLM
LAAQNILNPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFRDQNEAVIAWRNGYVHL
HSRIGVNPNSLGEKPFTEWQKERTMITTVGKIIFNEIMPPEFPYLNEPTDFNLTVQTPDK
YFVEAGTDIPAHIKEQELVLPFKKKNLGNIIAEVFKRFKVTETSKMLDRMKDLGYKHSTH
AGITVGIADISVLNEKQEIIENAHKQVETITKQFRRGLITDDERYERVIAVWNAAKDSIQ
QKLMEGLEAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSV
LEMFISTHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLEIQAIREGN
EIIESLEDRLVGRYTRKEVRHPETNELIIAGNQLISEDIAKQIVDAGVETVTIRSVFTCN
TKHGVCKHCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGL
PRVQEIFEARNPKGQAVITEVTGDVIDISEDPATRTKEVTIKGKTDTRTYTVPYTARMKV
AEGDMIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVR
QMLRKVRVMDPGDTDILPGTLLDIADFKDQNYNTLVSGGVPATSRPVLLGITKASLETNS
FLSAASFQETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMQRYRDMEPKEVGVAS
ENVYSISDIEAQMAAEDAMNNQTK
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggagggaaccccttttgatcgatgtaaataaattcgaaagtatgcaaataggt
ttggcttctcccgaaaaaatcagaagctggtcttacggtgaagtaaaaaaacctgagacg
attaactatcgtaccttaaaacctgaacgcgaagggttgttctgtgagcggatttttggt
cctacaaaagactgggaatgtgcctgcggaaaatacaaacgtatccgttataaaggaatc
gtttgtgatcgatgcggagtggaagttactcgttcgaaagttcgccgtgaacgcatggga
catattgaattagcagctcctgtttcacatatctggtactttaaagggattccttcacgt
atgggtcttgtattagacatgagcccacgcgctttggaagaaatcatttattttgcttca
tatgtagtcatcgaaccaggaaatacgaatttagagaaaaaacaattgttgacagaacgc
gaatatcgcgaaaaacgtgaacaatatggacaagaattccaagctgctatgggtgcagaa
gcgattaaacaattacttgataatgttgatctagatgcagaagcagccgaattgaaagaa
gaattgaaatctgcacaaggacaaaaacgtacacgtgcaatccgccgtttggatatttta
gaagcattccgcgcttcaggaaatcaaccaagctggatggttatggacgttatccctgtt
attccaccagatttacgcccaatggttcaattagaaggtggacgttttgcaacaagtgac
ttgaatgatctttaccgtcgtgtaatcaaccgtaataaccgtttgaaacgtttgttagac
ttgaatgcacctggaatcatcgttcaaaatgaaaaacgtatgctgcaagaagcagtagat
gcattgatcgataacggtcgtcgcggacgtccagttactggaccaggtaaccgcccattg
aaatctctttctcatatgttgaaagggaaacaaggtcgtttccgtcaaaacttgctaggt
aaacgtgtcgactactcaggtcgttccgttatcgttgttggacctttcttgaagatgtac
caatgtggacttccaaaagaaatggccattgaattattcaaaccattcgtgatgcgtgag
cttgttcaacgcgaactagcttcaaacatcaaaaatgcgaaacgtaaaatcgaacgtcaa
gaagacgaagtatgggatgttttagaagacgtaatcaaggaacacccagtattgctgaac
cgggcacctacgcttcaccgacttggtatccaagcattcgaaccagttttagtacaagga
cgcgcaatccgtttgcatccacttgtatgtgaagcttataatgccgatttcgatggagac
caaatggctgtccacgttccattgaatgaagaagcacaagcagaagcacgtatgttgatg
ttagctgctcaaaacatcttgaaccctaaagatggtaaaccagttgttactccttctcaa
gatatggttctaggtaactactacttgacaatggaagaagaaggacgcgaaggcgaagga
atggtcttcagagatcaaaacgaagccgttatcgcatggcgcaacggatatgttcattta
cattcacgtatcggtgtgaaccctaactcattaggtgaaaaaccatttactgaatggcaa
aaagaacgtacgatgatcacaacagttggtaagatcatcttcaacgagatcatgcctcct
gaattcccttatctgaatgaaccaacagacttcaacttgaccgtccaaacaccggacaaa
tactttgttgaagctggtactgatattcctgcacatatcaaagagcaagaattagtatta
ccgttcaagaagaaaaacttaggaaacatcatcgcagaagtcttcaaacgattcaaagta
acagaaacttctaagatgcttgaccgtatgaaagacttagggtacaaacattcgacacat
gccggtatcacagtagggatcgctgacatcagtgtactgaatgaaaaacaagaaatcatt
gaaaatgcccataaacaagttgaaactattacaaaacaattccgtcgtggtctgatcaca
gatgacgaacgttatgaacgtgtcattgctgtttggaatgctgcaaaagacagcatccaa
caaaaactgatggaaggtttggaagcgaaaaatccaatcttcatgatgtctgattctgga
gctcgtggtaacatttccaactttacacagcttgccggaatgcgtggtttgatggccgct
cctaatggtcgaatcatggaattgccaatcatttcgaacttccgtgaaggactatccgtc
ttggaaatgtttatctcaactcacggggctcgtaaagggatgaccgatacagccttgaag
actgccgattcaggttacttgactcgtcgtctggttgacgtggcccaagatgtaatcatc
cgtgaagaagattgcggtactgaccgaggtcttgaaatccaagccatccgcgagggaaat
gaaatcatcgaatcattagaagatcgtttagtgggacgttacacccgtaaagaagtacgt
catcctgaaacaaatgaattgatcattgcaggaaaccaattgatttccgaagacatcgca
aaacaaatcgttgatgcaggtgtcgaaacagtgacaatccgttctgtcttcacatgtaat
acaaaacatggtgtctgcaaacattgttacggacgcaaccttgcaactggctctgacgtt
gaagtcggagaagcagttggtacgatcgccgctcaatcaatcggtgaacctggtactcag
ttgacgatgcgtacattccatacaggtggggttgccggagacgatatcactcaaggtctt
cctcgtgtccaagaaatctttgaagcacgtaatccgaaagggcaagcagtgatcacagaa
gtaacaggggatgtcatcgatatctcagaagatcctgcaacacgtaccaaagaagtaaca
atcaaaggaaaaacagatacacgtacgtatactgttccttatacagcacgtatgaaagta
gcagaaggcgatatgatccaccgtggtgcaccattgacagaaggatcaatcgatccaaaa
caattgttgcaagttcgcgatgtattatctgttgaaaactacttgcttcgtgaagtacaa
cgtgtttaccgtatgcaaggggtagaaatcggcgacaagcatatcgaagtaatggttcgt
caaatgctgcgtaaagttcgtgtaatggatccaggtgatacagatatcttaccaggtaca
ttattagacatcgcagactttaaagatcaaaactacaatacgctagtctcaggaggcgtt
cctgcaacttctcgacctgtcttactaggtatcacaaaagcatcattagaaacaaatagt
ttcttatctgctgcatcattccaagaaacaactcgtgtcttgacggatgctgcgatccgc
ggtaagaaagatcctcttcttggtttgaaagaaaatgttattataggtaagatcatccca
gctggtactggtatgcaacgttatcgtgacatggaaccaaaagaagtcggtgtagcaagc
gaaaatgtctacagtatttcagatattgaagcgcaaatggctgcagaagacgcaatgaac
aatcaaacaaaatag
DBGET
integrated database retrieval system
