Eptesicus fuscus (big brown bat): 103288921
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Entry
103288921 CDS
T09083
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
efus
Eptesicus fuscus (big brown bat)
Brite
KEGG Orthology (KO) [BR:
efus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
efus03016
]
103288921 (RTCB)
Enzymes [BR:
efus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103288921 (RTCB)
Transfer RNA biogenesis [BR:
efus03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103288921 (RTCB)
Prokaryotic type
tRNA splicing ligases
103288921 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103288921
NCBI-ProteinID:
XP_008142931
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All DBs
Position
7:complement(97479693..97499537)
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGIFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactacaacgatgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggaattttctatgtaaatgat
gctctggaaaaattaatgtttgaggaattaaggaatgcgtgtcgaggtggcggtgttggt
ggcttcctgcctgccatgaaacaaattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gccttcgatatgaatgaccctgaagcagtggtgtccccaggtggtgtcggatttgacatc
aattgcggtgtccgcttgctaagaaccaatttagatgaaagcgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacatccctgttggggtgggatccaaaggtgtc
atcccaatgaatgccaaagacttggaagaggccttggagatgggtgtggactggtcgctg
agagaaggctacgcctgggctgaggacaaggagcactgtgaggagtatggaagaatgctg
caagctgaccccaacaaggtctctgcgagggcgaagaaaagaggccttcctcagttgggg
accctgggagcaggtaaccactatgcagaaatccaagtcgtagatgagattttcaatgag
tatgctgctaagaagatgggcatcgaccataaaggacaggtgtgcgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgccctggttgctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgctcgaatcgcttct
ccagagggtcaggattacctgaagggaatggcagccgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtattcaacacaacccct
gatgacttggacctacacgtcatctacgatgtttcccacaatatcgccaaagtggaacag
catgtggtggatggaaaggagcggaccctgttagtgcacaggaagggatccacccgagct
ttccctcctcaccatcccctcattgctgttgattaccaactcactggacaaccagtgctc
attggtggcaccatgggaacctgtagttacgttcttactggcactgagcagggcatgact
gagacctttgggacaacctgccatggagcgggccgtgcactgtcccgagcaaagtctcga
cgtaacttagatttccaggacgtcttagacaaattggcagatatgggaattgcaattcgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaacgtgacggat
gtggtgaacacctgccatgatgctggaatcagcaagaaggccattaaactgagaccgatt
gctgttatcaaagggtag
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