Eptesicus fuscus (big brown bat): 103292046
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Entry
103292046 CDS
T09083
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
KO
K12857
Prp8 binding protein
Organism
efus
Eptesicus fuscus (big brown bat)
Pathway
efus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
efus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103292046 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
efus03041
]
103292046 (SNRNP40)
Spliceosome [BR:
efus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103292046 (SNRNP40)
Complex C
U5 SnRNP specific factors
103292046 (SNRNP40)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Cytochrom_D1
WD40_like
WDR54
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
103292046
NCBI-ProteinID:
XP_054577205
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All DBs
Position
9:complement(19261714..19288544)
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AA seq
358 aa
AA seq
DB search
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacaacagaagcgcaagggtccagagttgccgctggtcccagtcaagaggcag
cggcatgagttgctgttgggagcggcggggtcgggccccggagcgggacagcagcaggcg
gcgccgggagctttgctgcaagcggggcctccaagatgttcctcccttcaagccccaatc
atgcttctctcaggacatgaaggggaagtgtactgctgcaagtttcaccccaatggatcc
accttggcatctgcaggattcgaccgactgatattgttgtggaatgtctatggtgactgt
gataactatgcaacattgaagggacacagtggagcagtgatggaactgcattacaacaca
gatggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggatagtgaa
acaggtgagagagttaaaaggctgaagggacatacttcctttgtgaattcctgttatccg
gccaggaggggcccccagcttgtctgcactggcagtgatgatggtacagttaagctttgg
gacatccggaagaaagcagccatccagacatttcagaatacctaccaggtgttagctgtg
accttcaatgacacaagcgatcagattatttctggtggaatagacaatgatatcaaggtc
tgggacctgcgtcaaaacaagctgacctacaccatgagaggccatgcagattcagtgact
ggcctgagtttaagttctgaaggctcttaccttctgtccaatgcaatggacaatacagtg
cgggtctgggatgtccggccatttgctcccaaagagagatgtgtaaagatatttcaagga
aatgtccacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaag
atagcagctggctcagccgacaggtttgtgtatgtgtgggataccacgagcaggaggatt
ttgtataagctgccgggccatgctggctccatcaatgaagtggctttccaccccgacgag
cccatcattctctcagcatccagtgacaagagactgtatatgggggagatccagtga
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