Eptesicus fuscus (big brown bat): 103303103
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Entry
103303103 CDS
T09083
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
efus
Eptesicus fuscus (big brown bat)
Pathway
efus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103303103 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efus03019
]
103303103 (MTREX)
03041 Spliceosome [BR:
efus03041
]
103303103 (MTREX)
03009 Ribosome biogenesis [BR:
efus03009
]
103303103 (MTREX)
03016 Transfer RNA biogenesis [BR:
efus03016
]
103303103 (MTREX)
Enzymes [BR:
efus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103303103 (MTREX)
Messenger RNA biogenesis [BR:
efus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103303103 (MTREX)
Spliceosome [BR:
efus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103303103 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
103303103 (MTREX)
Ribosome biogenesis [BR:
efus03009
]
Eukaryotic type
Pre-60S particles
Helicases
103303103 (MTREX)
Transfer RNA biogenesis [BR:
efus03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103303103 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103303103
NCBI-ProteinID:
XP_008158351
LinkDB
All DBs
Position
4:112331523..112385431
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAPGTRKDKEKGKWKGPPGSAEKAGKRADGNLQSESASVGKA
KRHVDFEGTDEPVFGKKPRVDESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
IPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLREAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVRNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKPEE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPRLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWAAGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgagctcttcagtgtgttcgaggacgactccgccgctgcg
cctggaaccaggaaagacaaggagaaggggaaatggaaggggcctccggggtctgcggaa
aaggccgggaaacgtgctgatggcaatttacaatccgagtcagcgagtgttggaaaagcc
aagagacatgtggattttgaaggcacagatgaacccgtctttggaaagaagcccagggta
gacgagtccataactgaagacttaagtttggcggacttgatgcccagagtgaaagtgcag
tcggttgaaaccgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ataccacttaagcctcgagttggaaaagctgcaaaggaatacccgttcatccttgacgcc
tttcagagagaagccatccagtgtgtggacaataaccagtctgttttagtgtccgcacac
acatcagccgggaaaactgtatgtgccgagtatgccatcgcattggccttaagggaaaaa
cagcgtgtaatattcaccagcccgattaaggctctgagtaaccagaagtaccgtgaaatg
tatgaagaatttcaagatgttggtctgatgacgggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaggttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtggtatgggaagaaactatcattttgcttcctgataatgtccactatgtctttctc
tcggctactattccaaacgcccgacagtttgccgaatggatttgccatttacataagcag
ccttgccacgtaatttacacggattaccggcctactccactgcagcactacattttcccg
gcggggggcgacggcctgcaccttgtggttgatgaaaatggtgacttccgagaagataac
ttcaacaccgcaatgcaggttctccgagaggcaggggacctggcgaagggcgatcagaag
ggtcggaaaggaggaaccaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagtttcagtaagaaagattgtgaagcctat
gcacttcaaatgaccaagctagatttcaacacagatgaagaaaagaagatggttgaagaa
gtgttcagcaatgcaattgactgcttgtcggatgaagataaaaagctccctcaggttgaa
catgtacttcctcttttgaagcgggggattggcatccaccatggtggtttacttcctatt
ttgaaagaaactatagaaatcctcttttctgaagggttgataaaggcgttatttgcgacg
gagacttttgctatgggaattaacatgccagctagaacagttttatttacaaatgcccga
aaatttgatgggaaagacttccgatggatttcttctggtgaatacattcagatgtctggt
cgtgctggaaggagggggatggatgaccgaggaatcgtgattcttatggttgacgagaag
atgagcccaaccattgggaagcagctgcttaagggctcagccgaccctctgaacagtgct
ttccatttaacatacaacatggttctgaacttgctgcgtgtagaagaaatcaaccctgag
tacatgctggaaaagtccttctaccagttccagcattacagagccattcccggggtggtg
gagaaggtaaggaactcagaagaacaatataataaaatagtaatacccaatgaagaaagt
gtggtcatctattacaagattagacagcagcttgccaaactgggtaaagaaattgaagaa
tatattcacaaaccaaagtattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaacgaaggagacgattttggctggggagtagttgtgaatttctccaaaaagtcaaac
gttaagcccaactctggtgagctagacccgctgtacgtggtggaagtacttctgcgctgc
agccgagaaagcttgaaaaactccgccacggaggctgcaaaaccggccaagcccgaggag
aagggggagatgcaggttgttccagtcctggtgcacctcctgtccgctatcagcagtgtt
aggctctacatccccaaagaccttcggcccctggacaacaggcagagcgtcctcaagtca
atacaggaagttcagaaacggtttccggatggtgttcccttattggaccctatcgatgac
atgggcattcaagaccagggcctgaagaaggtcatccagaaagtggaggcgttcgagcac
cgcatgtactcgcatccacttcacaacgacccgaacttggagaccgtgtatacgctctgt
gaaaagaaagcacagatcgcaatagatattaaatctgcaaagcgagaacttaagaaagca
agaacagtcctgcagatggatgaactcaaatgccgcaaacgcgtgttaaggcgcctggga
ttcgccacttcttcggatgtcatagagatgaagggacgcgtggcctgtgagatcagcagt
gccgacgagctcctgctcaccgagatgatgttcaacggcctcttcaacgacctgtccgcg
gagcaggccaccgccctgctgagctgcttcgtgttccaggagaactccagtgagatgccc
aggctgacggagcagttggcggggccacttcgccagatgcaggaatgtgctaaacgaatt
gcaaaagtgtcagcagaagccaaattggaaattgatgaggaaacttacctgagctccttc
aagcctcacttaatggatgtagtgcacacctgggcagcgggggcgacgtttgcccacatc
tgcaaaatgacagacgtctttgaaggcagcatcatccgctgcatgcggcgcctggaggag
ctgctgcggcagatgtgtcaggcggcgaaagccatcgggaacactgagctggagaacaag
tttgcggaaggcatcaccaagatcaagagggacattgtgtttgctgccagcctctacctg
tag
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