Qipengyuania flava: CHH26_08285
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Entry
CHH26_08285 CDS
T04986
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
efv
Qipengyuania flava
Pathway
efv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH26_08285 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efv03019
]
CHH26_08285 (rnr)
03016 Transfer RNA biogenesis [BR:
efv03016
]
CHH26_08285 (rnr)
Enzymes [BR:
efv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHH26_08285 (rnr)
Messenger RNA biogenesis [BR:
efv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHH26_08285 (rnr)
Transfer RNA biogenesis [BR:
efv03016
]
Prokaryotic type
tRNA degradation factors
CHH26_08285 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
WHD_RNase_R
S1
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ASP30236
LinkDB
All DBs
Position
complement(1667480..1669822)
Genome browser
AA seq
780 aa
AA seq
DB search
MTAMTKQNKFRKPQGLPSKQQILEFIQTSDTPAGKREIAKAFGLKGQEKIALKKRLKDMA
EEGLIDGKRTAYHRMGGVPKVTVLKIVAIEDGEAIAEPENWAPDSKEKPPRLVVKDSKKI
AAVKRGDRILARNEETGRGWIAHPMKKLPARTEGLMGVVEMDGAGKPWLAPVDKRVRDSA
PIGDLGEAEAGDLVLAERMGKSARSKVKVVEVIGDPLAPKAFSLIAIAKHGIPHVFPQET
IAEAERAIDLPLSRDHREDLRDVPIVAIDPADARDHDDAIWAEPDGKGGYRAIIAIADVS
YYVRPGGDLDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKQDVDRAAMACHIHIDKDG
KISDWRFTRAIVRLAKNIAYEDAQATIDAGDPPEYLQNLWGAWKLLFKARQARDPLDLEL
PERQVRLNDAGVIEEIAVRERLDAHRVVEDFMIAANVAAAKALEAKAAPVVYRVHEQPSR
EKLLAFREYLATQGKKFALGQVITPGLFNRMLKDISDPAEKALIMEAVLRSQTQAFYGPQ
NAGHFGLSLGSYAHFTSPIRRYADLLVHRALVDAYKLEQPKPEPALDMPEGSGLSDRDKT
ALHQITDAISQTERRAMEAERDTIDRYVAAWLSGRVGETFDTRITGVQGFGFFATIEKLG
GDGLVPVSTLGREYFTYDEAAQKLVGERSGTEYAEGDRLKLKLAEANALTGALKFEVPDS
DGAGIEPRGNRAPSKKRSHQKKGPRKGPAGGKGKGAPRQSHAQGQRGRPGNIRHQGRKKK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgacggccatgacaaaacagaacaaattccggaagccgcaggggcttccgtcgaaacag
caaatactcgaattcatccagacctccgatacccccgccggcaagcgcgaaatcgccaag
gccttcgggctcaaggggcaggaaaagatcgcgctcaagaagcgcctcaaggacatggcc
gaggaaggcctgatcgacggcaagcgcaccgcctatcaccgcatgggcggggtgcccaag
gtgaccgtgctcaagatcgtcgcgatcgaggatggcgaagcgatcgccgagcccgagaac
tgggctcccgacagcaaggaaaagccgccgcggctggtggtgaaggacagcaagaagatc
gccgcggtcaagcgcggcgaccgcatccttgcgcgtaacgaggaaaccggacgcggctgg
atcgcgcatccgatgaagaagctgcccgcgcgcaccgaaggcctgatgggcgttgtcgag
atggacggcgcgggcaagccgtggctcgccccggtcgacaagcgcgtgcgcgacagtgcg
ccgatcggcgacttgggcgaggccgaggcaggcgacctcgtgctggccgaacgcatgggc
aagtccgcgcgttcaaaggtcaaggtggtcgaggtcatcggcgatccgctggcgcccaag
gccttcagcctgatcgccatcgccaagcacggtattccgcatgtcttcccgcaggaaacc
atcgccgaggccgagcgcgcgatcgacctgccattgtcgcgcgatcaccgtgaagacctg
cgcgacgtccccatcgtcgccatcgaccctgccgatgcgcgcgaccatgacgacgcgatc
tgggccgagcccgacgggaagggcggttaccgcgcgatcatcgcgatcgccgatgtcagc
tattacgtccgccccggcggcgatctcgaccgcgaagcgcgcaagcgcggcaattcggtc
tatttccccgaccgcgtcgtgccgatgctgcccgaagtgctcagcgccgatgtctgcagc
ctcaagcaggatgtcgaccgggcggccatggcctgccacatccacatcgacaaggacggc
aagatcagcgactggcgcttcacccgcgccatcgtgcgcttggcgaagaacatcgcctat
gaggacgcgcaggcgacgatcgatgccggcgacccgcccgaatacctccagaacctgtgg
ggtgcgtggaagctgctgttcaaagcgcggcaggcccgcgacccgctcgatctcgaactg
cccgaacggcaggtccgcctcaacgacgcgggcgtgatcgaggaaatcgcggtccgcgaa
cggctcgatgcgcatcgcgtggtcgaagatttcatgatcgctgccaatgtcgcggcggcc
aaggcgctagaggccaaggccgcgccggtggtctaccgcgtgcacgaacagccgagccgc
gaaaagctgctcgccttccgcgaatatctggccacgcagggcaagaaattcgcactgggg
caggtgatcacgccggggctgttcaaccgcatgctcaaggacatttcggacccggccgaa
aaggcgctgatcatggaagcggtgctgcgcagccagacgcaggcgttctacggtccgcag
aacgccgggcatttcggcctgtcgctcggcagctatgcgcatttcacctcgccgatccgg
cgctatgccgacctgctggtgcaccgtgcgctggtcgatgcctacaagctcgaacagccc
aagcccgagccagcgctcgacatgcccgaaggctcgggcctgtccgaccgcgacaagacc
gcgctgcaccagatcaccgatgcgatcagccagaccgaacgccgcgcgatggaggccgaa
cgcgacacgatcgaccgttatgtcgcggcctggctgtcgggccgcgtgggcgaaaccttc
gacacgcgcataaccggcgtgcagggcttcggcttcttcgccacgatcgagaagctcggc
ggcgacgggctggtcccggtcagcacgctggggcgcgaatatttcacctatgacgaagcc
gcgcaaaagctcgtcggcgaacgcagcggcaccgaatatgccgagggcgaccggctcaag
ctcaagctggccgaagccaacgcactgaccggggcgctcaagttcgaagtgcccgatagc
gatggggcggggatcgagccgcgcggcaatcgcgcgccctcgaagaagcgcagtcaccag
aagaaagggccgcgcaagggtcctgccggaggcaagggcaagggcgcaccgcgacagtcg
cacgcgcagggccagcgcggccgcccggggaacatccgccaccaggggcgcaagaagaag
tag
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