Enterococcus gallinarum: AL523_04565
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Entry
AL523_04565 CDS
T04148
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ega
Enterococcus gallinarum
Pathway
ega03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ega00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AL523_04565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ega03021
]
AL523_04565 (rpoC)
03400 DNA repair and recombination proteins [BR:
ega03400
]
AL523_04565 (rpoC)
Enzymes [BR:
ega01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AL523_04565 (rpoC)
Transcription machinery [BR:
ega03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AL523_04565 (rpoC)
DNA repair and recombination proteins [BR:
ega03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AL523_04565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AMG49080
LinkDB
All DBs
Position
complement(965011..968661)
Genome browser
AA seq
1216 aa
AA seq
DB search
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIEPGNTSLEKKQLLTEREYREKRDQYGQEFSAAMGAEAIKQLLD
GVDLEGEVAELKEELKNATGQKRTRAIRRLDILEAFRASGNKPSWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMRELVSREIASNIKNAKRKIERQEDEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMIFRDMDEAVTAWRNGYVHLHTRIAIN
PNTLGDKPFTSEQKQRLMVTTVGKVIFNSIMPPEFPFLNEPTDYNLTVQTPDKYFIEAGT
DVPAFIKEQELVGPFKKKNLGNIISEVFKRFRITETSRMLDRMKDLGYSHSTMAGITVGI
ADIMNLHEKHEIIDNAHKQVETITKQFRRGLITDDERYERVIGVWNAAKDEIQLKLMESL
EAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLDIQAIREGNEIIESLE
ERLIGRYTRKSVIHPETGEVLLGVNELITEDLAKAIVDAGIETVSIRSVFTCNTKHGVCK
HCYGRNLATGSEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGQAVITEVTGEVIDISEDPSTRTKEVTIKGETDTRTYTVPYTARMKVAEGDFIH
RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKVR
VMDPGDSGILPGTLLDIADFKDRNYDTLVAGGVPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMPRYREMEPKEVTVASENVYSIS
DIEAQMAAEDALNSQN
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaagtatgcaaatcggtttggcttctcctgaaaaaatc
agaagctggtcttatggtgaagtaaaaaaaccagaaaccattaactaccgtacgttaaaa
cctgaacgcgaagggttgtttgacgagcgtattttcggtccaaccaaagactgggaatgt
gcttgcggcaaatacaaacggatccgctataaaggcatcgtttgtgaccgttgcggcgtg
gaagtaacacgttcaaaagtgcgtcgtgaacgcatgggacacattgaactagcagcacca
gtatcacacatttggtacttcaaaggcattccttcacggatgggtcttgtcttagacatg
agcccacgtgcattagaagaaatcatctactttgcttcatacgtagtgattgaaccagga
aacaccagccttgagaaaaaacaactattgactgaacgggaataccgtgaaaaacgtgac
caatacggtcaagaattttcagcagcgatgggtgccgaagccatcaaacaattattagat
ggcgttgatcttgaaggcgaagttgctgaattaaaagaagaattgaaaaacgcgactggt
caaaaacggacccgtgcgatccgccgtttggatatcttagaagcattccgtgcttcagga
aacaaaccaagctggatggtcatggacgttatcccagttatcccgcctgatttgcgtcca
atggtgcaattagaaggtggacgttttgccacaagtgacttgaacgacttgtatcgtcgt
gtaatcaaccgtaacaaccgtttgaaacgcttgttagatttgaatgcaccaaacatcatc
gttcaaaatgaaaaacggatgctacaagaagcagtcgatgccttgatcgataacggtcgt
cgcggccgtccagttgcagggccagggaaccgcccattgaaatctctttctcacatgttg
aaagggaaacaaggtcgtttccgtcaaaacttgctaggaaaacgggtcgactactcaggt
cgttcagttatcgtcgtgggtccattccttaaaatgtaccaatgtggtctgccaaaagaa
atggcgatcgaattattcaaaccattcgtgatgcgggaacttgtttctcgtgaaatcgcg
tcaaacatcaaaaatgccaaacgcaaaatcgaacgtcaagaagacgaagtttgggatgtc
ttagaagatgttatcagagaacatccagtgctattgaaccgggcacctacgcttcacaga
ttaggtatccaagcatttgaacccgtcttagttgaaggccgtgccattcgtttgcaccca
cttgtttgtgaagcctacaatgccgatttcgatggagaccaaatggccgttcacgtacca
ttgaacgaagaagcgcaagcagaagcacgtatgctgatgttagcagcccaaaacattttg
aatccaaaagacggaaaaccagttgtaacaccatctcaggatatggtcctagggaactac
tacttgacgatggaagaagaaggccgtgaaggggaaggcatgatcttccgtgacatggac
gaagcagttacggcatggcgcaatggctacgtgcatttacacacacggatcgctatcaat
ccaaacactttaggggacaaaccattcacgtctgaacaaaaacaacgcttgatggtaaca
acggtgggtaaagtgatctttaactcgatcatgccaccagaattcccattcttaaacgaa
ccgacagactacaacttgacggttcaaacaccagacaagtactttattgaagctggtaca
gatgtgcctgccttcatcaaagaacaagagcttgttggcccattcaagaagaaaaactta
ggaaacatcatttcagaagtcttcaaacgtttccgcatcactgaaacgtcacgcatgctt
gaccgcatgaaagacttaggatacagccattcaacaatggcgggtatcaccgttggtatc
gctgatatcatgaacttgcacgaaaaacatgaaatcatcgacaatgcccacaaacaagtt
gaaacgatcacgaaacaattccgtcgtggattgattaccgatgacgagcgttatgaacga
gttattggtgtttggaatgcagccaaagatgaaattcagttaaaactgatggaatcattg
gaagcgaaaaacccaatcttcatgatgtctgattccggtgcccgtggtaacatctccaac
tttactcagcttgctgggatgcgtggattgatggccgcgcctaacggacgaatcatggaa
ttgccgatcatctcaaacttccgtgaaggtctatctgtcttagaaatgtttatctcgacc
catggtgcccgtaaagggatgaccgataccgccttgaaaacagccgattccggttacttg
acacgtcgtctcgttgacgttgcccaagatgttatcatccgtgaagacgattgtggtact
gaccgtggtttagacattcaagcaattcgcgaaggaaacgaaatcatcgaatccttagaa
gaacgtttgattggacgttacacacgtaaatcagtgatccatcctgaaactggcgaagtc
cttctaggggtcaatgaattgatcactgaagatttagctaaagccatcgtggacgctggt
atcgaaacagtatccattcgctctgtctttacatgtaacaccaaacatggtgtatgtaaa
cattgttatggccgcaacttagctactggttctgaagttgaagttggggaagcagtcggt
accatcgctgcccaatcaatcggtgaacctggtactcagttgaccatgcgtaccttccat
accggcggggttgccggagacgatatcacgcaaggtctccctcgtgtccaagaaatcttt
gaagcccgtaatccgaaaggacaagcggtcattaccgaagttaccggagaagtcatcgat
atctcagaagacccatcaactcggaccaaagaagtgactatcaaaggggaaaccgatacg
cgtacgtataccgttccttatactgcccggatgaaagtagcagaaggcgactttatccat
cgtggtgcgccattgacggaaggttcgatcgatccaaaacaactgttacaagttcgcgat
gtcttgtctgttgaaaactacctattacgggaagttcaacgcgtttaccggatgcaaggg
gtagaaatcggcgacaaacatatcgaagtaatggttcgtcaaatgctgcgtaaagtccgc
gtcatggatccaggtgattcaggcatcttgccaggaacattgttggatatcgccgacttt
aaagaccgcaactacgacacattggtagccggcggcgttcctgcaactagccgtccagtc
ctactaggaatcacgaaagcatctttggaaaccaacagcttcttgtctgctgcgtccttc
caagaaaccactcgtgtgttgaccgatgcagcgattcgcggcaagaaagatccacttctt
ggattgaaagaaaatgttatcatcggtaagatcatcccagctggtactggtatgcctcgt
taccgtgaaatggaaccaaaagaagtaacagttgccagcgaaaatgtctacagcatctca
gacatcgaagcacaaatggctgctgaagacgcattgaacagccagaactaa
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