Eggerthella guodeyinii: GS424_006485
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Entry
GS424_006485 CDS
T07376
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
egd
Eggerthella guodeyinii
Pathway
egd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GS424_006485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egd03019
]
GS424_006485
Enzymes [BR:
egd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GS424_006485
Messenger RNA biogenesis [BR:
egd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GS424_006485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
KR
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QOS69488
UniProt:
A0A6L7IVB2
LinkDB
All DBs
Position
complement(1585821..1587293)
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AA seq
490 aa
AA seq
DB search
MKQFNELGLSDQALQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPS
LDRLGHAKGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLK
HGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPSSRQT
LLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVDQYVVHVAQTLKPALLKALLAEK
GAERVIVFARTRSRADSTCRRLKRAGYTVEAIHSDRSQAQRRRALDNFANGKTGVLVATD
VLARGIDVEEVDYVVNFDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRDIEKL
IKRPIPVMEVASFDAEQAAEEAAGKAARADARRDPEIKQASKEMAARERKKAKAREQGQA
DAPAAGSKRPPAKKKPSGGQGGQPNRPQGPQGKKPNAPQGGAPKKRGGSDLRPGRAHRAA
VAQQRGKRSR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaattcaacgaactcggcctgtccgaccaggctttgcaagccgtcgcgcgcctg
ggctacgaagcgcccacgcccgtccaggagcaggccatcccgctggcgctcgaagggcgc
gacctcatcgccgccgccaagaccggcaccggcaagaccgcggccttctcgctgccctcg
ctcgaccgcctcgggcacgccaagggcggccagggcccgctcatgctcgtggtcacgccc
acgcgcgagctggcccagcagatcggcgaggtgtgcacggccatcgccgcgtccacgcat
caccgcatcctcaccgtggtgggcggcctgtcctacaccccgcagatcaacaagctgaag
cacggcgtggacatcctcatcgccacgccggggcgcctcgtggacctcatggagcagggc
gccgtgcgcctcggcgacgtggaggtgctcgtgctcgacgaggccgaccgcatgctggac
atgggcttctggccggccatgaagaagatcatcggcgccacgccctcctcgcgccagacg
ctgctgttctcggccaccatcgacgcgtccatcaagaacagcgtgggcaagctgctgcac
gacccggcgttcgtcgagatcgcgcacaagggcgagacggccgacaccgtggaccagtac
gtcgtccacgtggcgcagacgctcaagccggcgctgctcaaggcgctgctggccgagaag
ggcgccgagcgcgtcatcgtgttcgcccgcacgcgcagccgcgccgactccacgtgccgc
cgcctcaagcgcgccggctacaccgtggaggccatccactccgaccgcagccaggcgcag
cgccgccgcgcgctcgacaacttcgccaacggcaagaccggcgtgctcgtggccaccgac
gtgctggcgcgcggcatcgacgtggaggaggtggactacgtcgtgaacttcgacctgccc
acccagcccgaggattacgtgcaccgcatcggccgtacgggccgcgcgggcgccgcgggc
ttcgccgtgtcgttcgtcagccccgagaccgccgacgcgctgcgcgacatcgagaagctc
atcaagcggcccatccccgtcatggaggtggcctcgttcgatgccgagcaggccgccgag
gaagcggccggcaaggcagcccgcgccgacgcgcgccgcgaccccgagatcaagcaggcc
tctaaggagatggccgcgcgcgagcgcaagaaggccaaggcccgggagcagggccaggcc
gacgctccggcggcgggcagcaagcgcccgcccgcgaagaagaagccgtcgggcggccag
ggcggccagcccaaccgcccgcaaggcccgcagggcaagaagccgaacgccccgcagggc
ggcgcgccgaagaagcgcggcggctccgacctgcgccccggccgcgcccaccgcgccgcc
gtcgcccagcagaggggcaagcgcagcaggtag
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