Eggerthella guodeyinii: GS424_006830
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Entry
GS424_006830 CDS
T07376
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
egd
Eggerthella guodeyinii
Pathway
egd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
egd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GS424_006830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egd03400
]
GS424_006830 (mfd)
Enzymes [BR:
egd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GS424_006830 (mfd)
DNA repair and recombination proteins [BR:
egd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GS424_006830 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOS69550
UniProt:
A0A6L7IUJ1
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All DBs
Position
1661840..1665349
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AA seq
1169 aa
AA seq
DB search
MLIDSLTFTLEKSGCLDAFWGRLDGGEDGTLGVASSARPFLVAARFAHKPQPTLVVVAGE
DAAVAFSRSLAAYLGEERVMRFPERSDYPFVAKPSDPAQVARRMEAVHALAGGREAVVVA
SARALVRALPPAGSDVHLPVALEAGRELAAMPGAQAASVTEFEDLAHALEERGYRNTGEL
DGPGTFAVRGGTVDVYPGNLVYPVRLDFFGDELEEIRRIVPTTGQTIQALPGVSIYPVVE
FSCSKRGLARARQKLERPAATNPVLRDVLEKLDGGLRFDGSDMLLPYLYATTSTLGDYVR
PGALTALLEPRSLFDDMTHAYDDVVGRAKGSSIPVEGLYAEPGAVSFGEGQRATYVSIMR
VGGHVDDELPVKRVEVAGHPDKLFGRLRSLVDTDYTVVFSAPNFRARQDMKLAFVDHGLP
IQETLDVSKEDGSPSGRPAGEETDGAAKRRLRRGVVNVVDVDVPLGMIIPKAKLAIVSLS
DTQGSSSSRPSRHVDITEITFPYQPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYS
EGDKLYVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAFDLVDVYAR
RASTQGYRFGPDTAAQREMEEAFPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGK
TEVALRAAFKATQDAKQVMVLCPTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAA
ALKGFQDGDVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTL
SATPIPRTMQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDVVSGAIRRELARGGQVYY
VSNRVRSMEEAVRRVIAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESG
IDNPHTNTLIIEDSQRYGLAQMYQLKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALN
EHTDLGSGMRIAMRDLEIRGAGSLLGAEQSGNMSAVGFDLFAQMLSQAVNATREGDLKAM
ETLPPALSDITVNVPGHTYLPEEYVPDADERVLWYRKIASAATEQAVADVAADLADKRPD
MPQAAKNLLEKARIKAYANEHHIKTVSVTGGKLVVEPIDVSRDKMTGLRRAGGRYLADKR
KLSLPLRHFKLDEGDNLLGPVARFLEELA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcgactcattgacgttcacgctggagaaatcgggctgcctcgacgcgttctgg
ggcaggctcgacgggggcgaggacggcacgctcggcgtggcctcgtcggcgcgcccgttc
ctcgtggcggcgcgcttcgcgcacaagccccagccgacgctcgtcgtggtggcgggcgag
gacgccgccgtcgcgttctcgcgcagcctggccgcctacctgggcgaggagcgcgtcatg
cgcttccccgagcgcagcgactaccccttcgtcgcgaagcccagcgaccccgcgcaggtg
gcgcgccgcatggaggccgtgcacgcgctggccggcgggcgcgaggcggtggtggtggca
agcgcccgcgcgctcgtgcgcgcgctgccgccggcaggctccgacgtgcacctgccggtg
gcgctcgaggcgggccgcgagctggccgccatgcccggcgcccaggcggcgagcgtcacc
gagttcgaggacctcgcccacgcgctcgaggagcgcggctaccgcaacaccggcgagttg
gacggccccggcaccttcgccgtgcgcggcggcaccgtggacgtgtaccccggcaacctc
gtgtacccggtgcggctcgacttcttcggcgacgagctggaggagatccgccgcatcgtg
cccaccacgggccagaccatccaggcgctgccgggcgtgagcatctacccggtggtggag
ttctcgtgctccaaacgcgggctcgcccgcgcgcgccagaagctcgagcgccccgccgcg
acgaacccggtgctgcgcgacgtgctggagaagctggacggcggcctgcgcttcgacggc
tccgacatgctgctgccgtacctgtacgccaccacgtccacgctcggcgactacgtgcgc
cccggcgcgctcaccgcgctgctggagccgcgctcgctgttcgacgacatgacccacgcc
tacgacgacgtcgtgggccgcgcgaaaggctcgagcatcccggtggagggcctgtacgcc
gagcccggggccgtgagcttcggcgaggggcagcgcgccacgtacgtgtccatcatgcgc
gtgggcggacacgtggacgacgagctgcccgtgaagcgcgtggaggtggccggccatccc
gacaagctgttcgggcggctgcgcagcctcgtggacaccgactacacggtggtgttcagc
gccccgaacttccgcgcccgccaggacatgaagctggcgttcgtggaccacggcctgccg
atccaggagacgctggacgtctcgaaggaggacggctccccttcgggacgtcccgccggt
gaggagaccgatggcgcggccaagcgccgcctgcggcgcggcgtggtgaacgtcgtggac
gtggacgtgccgctcgggatgatcatcccgaaggcgaagctggccatcgtgagcctgtcc
gacacgcagggctcgtcctcgtcgaggccgtcgcgccacgtggacatcaccgagatcacc
ttcccctaccagccgggcgactacgtggtgcacgccgcgcacggcgtggcctacttcaag
gagctcgtgcggcgcgacgtggacggcacggcacgcgactacctgctgttggagtactcc
gagggcgacaagctgtacgtgccggtggagcagctcgaccgcgtgacgcgctacgtgggc
ccggagggcgcgagcccgcgcctcacgcgcctcaacacggccgactggtcgcgcgcgctg
gccaaggcgcgcaaggccacgaagaagctcgcgttcgacctcgtggacgtgtacgcgcgc
cgcgcctccacgcagggctaccgcttcgggcccgacaccgcggcccagcgcgagatggag
gaggcgttcccctaccaggagacgcctgaccagctggcggccatcgccgacgtgaaggcc
gacatgcagtcggcgaagcccatggaccgcctcgtgtgcggcgacgtgggcttcggcaag
accgaggtggccctgcgcgccgcgttcaaggccacgcaggacgccaagcaggtgatggtg
ctgtgccccaccaccatcctcgcgcagcagcactacacgaacttcaaggagcgctgcgag
cccttcggcgtgcgcgtggaggtgctctcgcgcttccgcacgcccgcgcagcaggccgcg
gcgctcaaaggcttccaggacggcgacgtcgacgtgctcgtgggcacgcaccgcctgctc
agccgcgacgtgaacccgcacgacctgggcctggtcatcatcgacgaggagcagcgcttc
ggcgtgggccacaaggagcagatgaagaacctgcgcgagtccatcgacgtgctcacactg
tcggccacgcccatcccgcgcaccatgcagatgtcgctgtcgggcgtgcgcgacatgagc
ctcatcctcacgccgcccgacgagcgccgccccgtcgaggtgcacgtgggcgagtgggac
cccgacgtggtgagcggcgccatccggcgcgagctggcgcgcggcggccaggtgtactac
gtgtcgaaccgcgtgcgctccatggaggaggcggtgcggcgcgtcatcgcggccgcgggc
gaggcgcgcgtgggcgtggcgcacgggcagatgtcgaaggagcagctcgagcgcgtgatg
gaggacttcagcgccggcgagctggacgtgctggtggccaccaccatcatcgagagcggc
atcgacaacccgcacacgaacacgctgatcatcgaggactcgcagcgctacggattggcg
cagatgtaccagttgaagggccgcgtgggccgctcgtgcacgcaggcgtacgcctacttc
atgttccccgagcacatggagctcaccgaggaggccgccgcgcgcctgaccgcgctgaac
gagcacaccgacctcggcagcggcatgcgcatcgccatgcgcgacctggagatccgcggc
gcgggcagtctgctgggcgccgagcagagcggcaacatgtccgcggtgggcttcgacctg
ttcgcgcagatgctgtcccaggcggtgaacgccacgcgcgagggcgacctcaaggcgatg
gagacgctgccgcccgcgctttccgacatcacggtgaacgtgccggggcacacctacctg
cccgaggagtacgtgcccgacgccgacgagcgcgtgctgtggtaccgcaagatcgcctcg
gccgccaccgagcaggccgtcgctgacgtggctgccgacctggcggacaagcgccccgac
atgccgcaggcggcgaagaacctgctggagaaggcgcgcatcaaggcctacgcgaacgag
caccacatcaagaccgtgtcggtgacgggcggcaagctggtggtggagcccatcgacgtc
tcccgcgacaagatgacggggctgcgccgcgcgggtgggcgctacctggccgacaagcgg
aagctgtcgctgcccctgcgccacttcaagctggacgagggcgacaacctgctgggcccc
gtcgcgcggttcctcgaggagctggcatga
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