KEGG   Eggerthella guodeyinii: GS424_011090
Entry
GS424_011090      CDS       T07376                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
egd  Eggerthella guodeyinii
Pathway
egd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:egd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GS424_011090 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:egd03400]
    GS424_011090 (ligD)
Enzymes [BR:egd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GS424_011090 (ligD)
DNA repair and recombination proteins [BR:egd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GS424_011090 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QOS67082
UniProt: A0A6L7IVQ8
LinkDB
Position
2629609..2632068
AA seq 819 aa
MTSPLSDYNRKRDFDRTTEPPGTAEPRSDEGGDGRLRFAVQHHCASRDHYDLRLEWNGTL
LSWAVPKGPSYNPRDKRLAVRVEDHPLDYRTFEGTIPKGEYGGGTVMLWDEGYWEPLVDV
EEGLRDGDLKFVLDGHRLKGAWVLVHMKPKGRERDDNWLLIKEKDDYVQDEAGIAGFDTS
VQTGRTMDEIARGEDERVVRNPFERVDVELAKLVSAAPPGDDWLFEVKYDGYRIVAFLEG
GTARLVTRNGNDYTERFDTVARSLEDWAGRRAMVLDGELAVADETGRTDFQALQGFLREP
QGKHPAYVAFDLLALDGEDLRDRPLVERKQLLEKLLQDAPDDVRYSVDVRGNGADSFRAA
CEQGLEGVVGKRADAPYRGARNGDWIKLKCGDEQEFVVGGYTRTAKRVRGISSLLLGLYE
EGRLVYAGRVGSGLSEAASNELLEAFAGLERPDAPFADAPKPRANERLTWLDPQAVVQVR
FSEWTEDGLLRHPSYLGLRTDKDPRDVRRESVEEPSPNPTERLELPMNESNEKSDELHID
GVRITNPGKLLFEEPPITKEDVVRYYARVADRMLPYAGGRILSIVRCPRGAGSACFFKKH
PGPSTPGVRTVSTPASDGGDELYFYVEDAVGIVSEAQMDTIEFHVWGSRVATLEQPDTMV
FDLDPDKGLALEQVRQGVRDLKGILDDLGLKTFLKTSGGKGYHVVVPFEPAASWDAFHDF
ARRIAQVMAEKWPDRYTSNVRLAKRTGKVFIDWMRNGRGATSIAPYSLRARSGARVSMPL
AWDELDEVAPNAVTMADALARIEGDDPWDGYFDVDQALE
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgacctcccctttgagcgactacaaccgcaaacgcgacttcgaccggacgacggaaccg
cccggcacggcggagccgcgctcggacgagggcggcgacgggcggctccgcttcgccgtg
cagcaccattgcgcgtcgcgggaccactacgacctgcgtctcgaatggaacggcacgctg
ctgagctgggccgttccgaaggggccgtcctacaacccgcgcgacaagcggctggccgtg
cgcgtggaggaccacccgctggactaccgcaccttcgagggcaccattccgaagggcgag
tacggcggcggcaccgtgatgctgtgggacgaagggtactgggagccgctcgtggacgtg
gaggaggggctgcgcgacggcgatctcaagttcgtcctcgacgggcaccgcctgaagggc
gcgtgggtgctcgtgcacatgaagccgaagggccgcgagcgcgacgacaactggctgctc
atcaaggagaaggacgactatgtgcaggacgaggccggcatcgcgggcttcgacacgtcc
gtccagacgggtcgcacgatggacgagatcgcccgcggcgaggacgagcgcgtcgtccgc
aacccgttcgagcgcgtcgacgtggagctcgccaagctcgtgagcgcggccccgcccggc
gacgactggctcttcgaggtcaagtacgacggctaccgcatcgtcgcctttctcgaaggc
ggcacggcgcgcctcgtcacgcgcaacggcaacgactacaccgagcgcttcgacaccgtc
gcgcgctcgctggaggattgggcgggccggcgcgcgatggtgctcgacggcgaactcgca
gtagccgacgaaaccggcaggaccgacttccaggcgctgcagggcttcctgcgcgagccg
cagggcaagcaccccgcctacgtggcgttcgacctgctggcgctcgacggcgaggacctg
cgcgaccggccgctcgtcgagcgcaagcagctgctcgagaagctgctgcaggacgcgccc
gacgacgtgcgctacagcgtggacgtgcgcggcaacggcgccgacagcttccgcgcggcc
tgcgagcagggcctcgaaggcgtggtgggcaagcgcgccgacgcgccgtaccgtggcgcg
cgcaacggcgactggatcaagctgaagtgcggcgacgagcaggagttcgtcgtcggcggg
tacacgcgcacggccaagcgcgtgcgcggcatcagctcgctgctgctgggcctgtacgag
gaggggcgcctcgtgtacgcggggcgcgtcggctcgggcctgagcgaggcggcgtcgaac
gagctgctggaagcgttcgccggcctcgagcggcccgacgcgcccttcgccgacgccccg
aaaccgcgcgcgaacgagcgcctcacgtggttggacccccaggcagtcgtgcaggtgcgg
ttctcggaatggaccgaggacggcctcctgcgccaccccagctacctgggcctgcgcacc
gacaaggacccgcgcgacgtacggcgcgaatccgtcgaggagccgtccccgaacccgacc
gagcgattggagcttcccatgaacgaatcgaacgagaagagcgacgagctgcatatcgac
ggcgtgcgcatcacgaaccccggcaagctgctgttcgaggaaccgcccatcacgaaggag
gacgtcgtgcgctactacgcccgggttgccgaccgcatgctcccctacgcgggcggccgc
atcctcagcatcgtgcggtgcccgcgcggcgcgggatcggcctgcttcttcaagaagcat
cccggcccctccaccccgggcgtgcgcaccgtgtcgacgcctgcgagcgacggcggggac
gagctgtacttctacgtggaggacgccgtcgggatcgtgtccgaggcgcagatggacacg
atcgagttccacgtgtggggcagccgggtggccacgctcgagcagcccgacaccatggtg
ttcgacctcgaccccgacaagggcctcgcgctcgagcaggtgcgccaaggcgtgcgcgac
ctcaagggcatcctcgacgacctggggctgaaaacgttcctcaagacgagcggcggcaag
ggctaccacgtggtggtacccttcgagcccgccgcgtcgtgggacgcgttccacgacttc
gcgcggcgcatcgcccaggtgatggccgagaagtggcccgaccgctacacgagcaacgtg
cgcctggcgaagcgcaccggcaaggtgttcatcgactggatgcgcaacgggcgcggcgcc
acgagcatcgccccgtactcgctgcgcgcccgcagcggcgcgcgcgtgtccatgccgctg
gcctgggacgagctggacgaggtggccccgaacgccgtcacgatggccgacgcgctcgcg
cgcatcgagggcgacgacccctgggacggctacttcgacgtcgaccaggcgctcgagtag

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