Duffyella gerundensis: EM595_0025
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Entry
EM595_0025 CDS
T04258
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ege
Duffyella gerundensis
Pathway
ege03030
DNA replication
ege03410
Base excision repair
ege03420
Nucleotide excision repair
ege03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EM595_0025 (polA)
03410 Base excision repair
EM595_0025 (polA)
03420 Nucleotide excision repair
EM595_0025 (polA)
03440 Homologous recombination
EM595_0025 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ege03032
]
EM595_0025 (polA)
03400 DNA repair and recombination proteins [BR:
ege03400
]
EM595_0025 (polA)
Enzymes [BR:
ege01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EM595_0025 (polA)
DNA replication proteins [BR:
ege03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EM595_0025 (polA)
DNA repair and recombination proteins [BR:
ege03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EM595_0025 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EM595_0025 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Sds3
WHD_BrxR
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CUU22262
UniProt:
A0A0U5L069
LinkDB
All DBs
Position
1:27789..30569
Genome browser
AA seq
926 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSMLLQYKPSHVAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT
LALQADKAGRSVLISTGDKDMAQLVTPNITLINTMSNSILGPEEVNDKYGVPPELIIDYL
ALMGDASDNIPGVPGVGEKTAQALLQGLGKMTALYENLDKVAALGFRGSKTMAAKLEQNK
ELAFLSYQLATIKTDVPLDLSYEQLNVAEPEVDSLLALFRHYEFKRWCSDLEEGKWLQGK
RGGGFTASASAVEAAPVVEATSVLSADGYVTILDEETFDQWLKKIAACDVFAFDLETDSL
DTLTATIVGISVAVAPGEAAYLPVAHDYIDAPPQLDRDWVLSRLKPILEDSSASKVGQNL
KYDRGVLKNYDIELQGIKFDTMLESYLLNSVVGKHDMDTLSARWLNHKTVTFVEIAGKGK
NQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKQTGPLRVFNEIEMPLVPVISRIE
RNGVLIDQHILARHSQELTLRLDELEKQAHELAGEPFNLSSTKQLQTILFEKQGIKPTKK
TPGGAPSTSEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPQMMNPFTGRVHTSYHQ
AVTATGRLSSTEPNLQNIPVRNDEGRRIRQAFIASPGCRIVAADYSQIELRIMAHLSQDK
GLLQAFAEGEDIHRATAAEVFGSPLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGA
GEARKYMDLYFERYPGVLQYMENTRKFAAEKGYVETLDGRRLYLPDIKSSNAIRRKAAER
AAINAPMQGTAADIIKRAMIEVDRWLQQQPDVKMIMQVHDELVFEVKESLLDEACEKIRQ
LMESSMQLDVPLQVEVGIGDNWDEAH
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatagcagaaaacccactgattctggtcgatggatcatcttatctttatcgt
gcttatcacgcttttcccccgctgactaacagcgcaggcgaaccaacgggtgcgatgtat
ggcgtcctgaatatgctgcgcagcatgctgctgcaatataagccgagccacgttgcagtg
gtttttgatgccaaaggaaaaacgtttcgcgatgagctgttcgagcattacaaatcgcat
cgtccacccatgccggacgatctgcgtgcgcaaatcgaacctttgcatcagatggtaaaa
gcgatgggcctgccgttgttggccgtttccggtgtcgaagctgatgacgtcatcggtacg
ctggccttgcaggcagataaagcgggtcgatcggtgctgatcagcaccggtgacaaagat
atggcgcagttagttacgccgaacatcacgctaattaataccatgagcaacagcattctt
ggcccggaagaggtcaatgacaaatatggcgtgccgccagagttgatcatcgattacctc
gcactgatgggcgatgcctccgataacattccgggcgtgccgggtgtcggtgagaaaacc
gcgcaggcgttgctgcagggattaggcaaaatgactgcgctctatgagaatctggataag
gtggccgcacttggcttccgcggttccaaaaccatggcggccaagcttgaacagaataaa
gagctcgcgtttctttcttatcaattggccaccattaaaaccgatgtgccgctggatctg
agttacgagcagctgaacgtagctgagccggaagtcgattcactgcttgcgctgttccgt
cattatgagttcaaacggtggtgcagcgatcttgaagaagggaaatggctgcagggtaaa
cgaggcggcggttttactgcgtctgcttccgctgtcgaagccgcgcccgtcgttgaggcg
accagcgtgctctctgctgacggttacgtcaccattcttgatgaagaaaccttcgatcaa
tggctgaaaaaaatcgcagcctgcgacgtatttgctttcgatctggaaacggattcgctg
gacacgctgaccgctactattgttggcatcagcgtagccgttgcgccgggcgaagcagcc
tatttgccggttgctcatgattatattgatgcgccaccgcagctcgatcgcgactgggtg
ctgtcgcgcctgaagccaatccttgaagacagctctgccagtaaagtcgggcaaaatctc
aaatacgatcgtggcgtgctgaaaaattacgatatcgaattacagggcattaaattcgat
accatgctcgaatcctacttgctgaacagcgttgtgggcaaacatgacatggatacgctc
tcagcacgctggctaaaccacaaaaccgttaccttcgtagagattgccggtaagggcaaa
aaccagcttacctttaaccagatagcgctggagcaggctgcgcattatgccgcagaagat
gccgacgtcacgctgcagctgcatctgaaaatgtggccggaactggaaaagcagactgga
ccgttacgcgttttcaatgagattgaaatgccgctggtcccggtgatttcgcgtattgag
cgaaacggcgtgctgatcgatcagcatattctggccagacattcgcaggagctaacgctg
cgccttgatgagctggagaaacaggcgcacgagctggctggcgagccgtttaatctctct
tctactaagcagctgcaaactattctgtttgagaagcagggcattaagccaactaaaaaa
acgccgggcggggcaccatcaaccagcgaagaggtgctcgctgagctggcacttgattat
ccgctgcctaaagtgatccttgaacatcgcggcttatcgaagctgaagtcgacctatacc
gacaaactgccgcagatgatgaatccgtttaccggacgcgtacatacctcttatcaccag
gcggtaacggcgaccggcaggctctcttcaaccgagccaaacctgcaaaatattccggtg
cgtaacgatgaagggcgtcgcattcgccaggcatttatcgcttcgccaggctgtcgcatt
gtggcagctgactattcgcaaattgagctgcgcattatggcgcacctgtcgcaggacaaa
ggtctgctacaggcgtttgctgaaggcgaagatattcaccgtgctaccgcggctgaagta
tttggcagcccgctggacaaggtcagtggtgagcagcgtcgcagcgccaaagcgatcaac
tttggcctgatttacggcatgagcgcttttggtctttctcgtcagctcaatatcggtgcc
ggcgaggcgcggaaatatatggacctttacttcgagcgttatcctggcgtgttgcagtat
atggaaaatacgcgcaaattcgccgcagaaaaagggtatgtggagacactggatggccgt
cgtctgtatctgccggacatcaaatccagcaatgcgattcgtcgcaaagccgccgagcgt
gcagcgatcaatgcgccaatgcagggtaccgcagcagacattatcaaacgcgccatgatc
gaagttgatcggtggctccagcagcagccggatgtgaaaatgatcatgcaggttcacgat
gagctggtgtttgaagtgaaagagtccctgctggatgaagcctgtgagaaaattcgccag
ctgatggaaagcagcatgcagcttgatgtgccattgcaggtagaagtgggcattggtgat
aactgggatgaagcgcactga
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