Duffyella gerundensis: EM595_0510
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Entry
EM595_0510 CDS
T04258
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ege
Duffyella gerundensis
Pathway
ege03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM595_0510 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ege03019
]
EM595_0510 (deaD)
03009 Ribosome biogenesis [BR:
ege03009
]
EM595_0510 (deaD)
Enzymes [BR:
ege01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EM595_0510 (deaD)
Messenger RNA biogenesis [BR:
ege03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EM595_0510 (deaD)
Ribosome biogenesis [BR:
ege03009
]
Prokaryotic type
rRNA helicases
EM595_0510 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CUU22747
UniProt:
A0A0U5L0T5
LinkDB
All DBs
Position
1:557614..559536
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AA seq
640 aa
AA seq
DB search
MTDIQTTFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALVRFLE
SEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFASKVQQQLESSDLDQYRALLSKLSPQDELDMETL
AAALLKMAQGERPLIVVPEAPRPQRREFRDRDDRRGDRPDRAPREAREARDGDRPRRERR
EVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAAHSTIELPKGMPGDI
LQHFTRTRILNKPMNMQLLGDAQPHERSAERGGDRRPAGAGRGGERGGREAGAAREPGRR
FSSDRPQAGREGNRGTFNREGGRGPRREEGTSAPTRRRDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaaccacttttgctgaccttggcctgaacgccgaccttctcgaatca
ctgaacggcatgggctacgttaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgcgatgtgttaggtatggcgcagaccgggagcggtaaaactgcagctttc
tcgctgccactgctacacaacattgaccctactgttaaggcaccacagattctggtgtta
gcaccaacgcgtgagttggcagtacaggtagcagaagcagtaaccgatttctctaaacat
atgcgcggtctgaatgtggttgccctttacggcggccaacgttatgacgtgcagctgcgc
gctttacgtcagggaccacaggttgttgtgggtacgcctggccgtctgcttgaccacctg
aaacgcggcacgttagatctctctaacctgcgcggcctggtgctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgtcgaaacgatcatggcgcagattcctgagggt
catcagaccgctctgttctctgccactatgccagaagcgattcgtcgtattaccaaacgc
tttatgaaagatcctcaggaagtgcgcattcagtcaagcatgacgacgcgtcctgatatc
agccagagctactggaccgcttacggtcgtaaaactgacgcactggtgcgtttccttgag
tcagaagattttgatgcggcgatcattttcgtacgtaccaaaaacgcgacactggaagtg
gccgaagcgctggagcgtagtggttataacagcgcggcactgaatggcgacatgaaccag
gcattgcgtgagcagaccctggagcgcctgaaagatggtcgtctggacatcctgatcgct
accgacgtcgcagcacgtggtctggacgttgagcgtatcagcctggttgttaactacgat
atccctatggatgcagaatcgtatgttcaccgcatcggccgtaccggtcgtgctggccgt
gctggtcgcgccttactgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatcgaa
cgcaccatgaagctgaccattccagaagtggaattgcctaatgcagaactgctgggcgaa
cgccgtttggctaagtttgccagcaaagttcagcagcagctggaaagcagcgatctggat
caataccgtgcactgctgagcaagctttctccgcaggatgagctggatatggaaacactt
gctgccgcactgctgaaaatggcacagggcgagcgtccgctgatcgttgtgccagaagcg
ccacgtccacagcgtcgtgagttccgcgatcgtgacgatcgtcgcggtgatcgtccggac
cgtgcaccacgcgaagctcgtgaagcacgcgatggcgaccgtccacgtcgtgagcgtcgt
gaagttggcgatatgcagctttaccgcatcgaagtgggccgtgatgatggcgttgaagtg
cgtcacatcgttggtgctatcgctaacgaaggtgatatcagcagccgttacattggtaat
atcaagctgtttgctgcgcactcaaccattgagctgccaaaaggcatgccgggcgacatt
ctgcagcacttcacccgcacgcgtattctgaacaagccgatgaatatgcagctgttaggt
gatgctcaaccacacgagcgttcagctgaacgtggtggcgatcgtcgtcctgcaggcgct
ggtcgtggtggtgagcgtggcggacgtgaagccggtgcagctcgtgagccaggccgtcgc
ttcagtagcgatcgtccacaggctggtcgtgaaggtaaccgcggtacgttcaatcgtgaa
ggtggacgtggtccacgtcgcgaagaaggcaccagcgcaccaacacgtcgccgtgatgcc
tga
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