Duffyella gerundensis: EM595_1933
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Entry
EM595_1933 CDS
T04258
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ege
Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ege03016
]
EM595_1933 (rnb)
Enzymes [BR:
ege01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EM595_1933 (rnb)
Transfer RNA biogenesis [BR:
ege03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
EM595_1933 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
CUU24167
UniProt:
A0A0U5L6S4
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All DBs
Position
1:2060852..2062786
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHAQTPRVEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRV
AAVIQTDKDREIAEPEKLIEPFLTRFVGRIQKKDDRLSIVPDHPLLKDAISCRPDRGVKH
DFQAGDWAVAEMRRHPLKGDRGFYAELTEFIIEGDNHLAPWWVTLSRHNLEREAPSVGFG
DMLDEQLTREDLTALDFVTIDSASTEDMDDALYVEALDEGALKLTIAIADPTAYVAEGSA
LDALAAERAFTNYLPGFNIPMLPRELSDNVCSLRANERRPALVCRVTIAKDGTLGDDVAF
SAAWIESKAKLVYDNVSDWLENSGEWQPESDAIAQQIRLLHAVCLARSEWRKTHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEEAMITANVCAAKVLREKLGFGIYNVHLGFD
AANAELAAAVLANHGVTADPQAIATLEGFRVLRRELDAQPTQFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMVNHRLLKAIVRGEQAQRPADDITLKMGERRRLGRM
AERDVGDWLYARYLQKAAGTDQKFSAEIIDVSRGGMRVRLLDIGAVAFIPAPFLHSVRDE
LVCSQENGTVQIKGEVAYRVTDVIDVTIAEVRMETRSVVARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagcttaaagagaagctccacgcgcagacgcct
cgtgtggaaggtgtggtaaaaggtaccgaaaaaggtttcggatttttagaagtagatgcg
caaaaaagctacttcattccaccaccgcaaatgaaaaaggtgatgcacggtgaccgcgtc
gcggcggtgatccagacggataaagatcgtgaaatcgctgaacccgaaaaactgattgag
ccttttctgacgcgctttgttggccgtatccagaaaaaagacgatcgcctctccatcgtt
cccgatcatcctttattaaaggatgcgatttcctgtcgtcccgatcgcggtgtaaagcac
gattttcaggcgggcgactgggcggttgccgaaatgcgccgtcatccgctgaaaggcgat
cggggcttctacgctgagctcaccgagttcattatcgaaggcgacaatcatctggcaccg
tggtgggtgacactgtcacgtcataaccttgaacgcgaagcgccaagcgtcggctttggc
gatatgctggatgaacagctgacccgcgaagatcttaccgcactggatttcgtcaccatt
gacagcgccagcacggaagatatggatgatgcgctgtatgtggaagcgctggatgagggt
gccctcaagctgaccatcgccattgccgatcctaccgcctacgtggcggaaggcagcgcg
ctggatgcgctggccgcagaacgcgcgttcaccaactatttaccgggcttcaatattccg
atgttgccgcgtgagctgagcgataacgtctgctcgctgcgcgccaacgaacgtcgtccg
gcgctggtgtgccgtgtcaccatcgctaaagatggcacactcggcgacgatgttgccttc
tccgccgcgtggattgaatcgaaagctaagctggtgtacgacaacgtttctgactggctg
gaaaacagcggtgaatggcaaccggagagcgacgcgattgctcagcagattcgtctgctg
cacgccgtttgtctggcccgcagcgaatggcgtaaaacccacgcgctggtgtttaaagat
cgccccgattaccgctttgtgctgggtgaaaaaggcgaagtgctggatatcgttgccgaa
ccgcgccgtattgccaaccgcattgtggaagaggcgatgatcaccgccaacgtctgcgcc
gcgaaggtgctgcgtgagaaactcggctttggtatctacaacgtgcatctgggctttgat
gctgccaacgctgaattggcggcggcggtgctggccaatcatggcgtaacggccgatccg
caggctatcgccacgctggaaggtttccgcgtattgcgccgcgaactggatgcccagcca
acgcagttccttgacagccgtattcgtcgcttccagtcgtttgctgaaatcagcaccgaa
cccggcccgcactttggccttggtctggaagcatacgcaacctggacctcaccgattcgt
aaatttggcgacatggtcaaccatcgtctgctgaaagcgatcgtgcgtggcgaacaggcg
cagcgtccggctgatgatatcaccctgaaaatgggtgaacgtcgtcgtctgggccgcatg
gccgagcgcgatgtcggcgactggctctatgctcgttacctgcagaaagctgccggtacc
gatcagaagttcagcgcagaaattatcgatgtttcccgtggcggtatgcgtgttcgcctg
ctggatatcggcgccgtagcctttattcctgcccctttcctgcacagcgtgcgtgatgaa
ctggtttgcagccaggaaaacggcaccgtgcagatcaaaggcgaagtggcctatcgcgtg
acggatgtgattgacgtgaccatcgctgaagtgcgcatggaaacgcgtagcgttgtcgcg
cggccagccgcataa
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