Duffyella gerundensis: EM595_2719
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Entry
EM595_2719 CDS
T04258
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ege
Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ege03009
]
EM595_2719 (srmB)
Enzymes [BR:
ege01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EM595_2719 (srmB)
Ribosome biogenesis [BR:
ege03009
]
Prokaryotic type
rRNA helicases
EM595_2719 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CUU24950
UniProt:
A0A0U5L851
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All DBs
Position
1:2902256..2903587
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AA seq
443 aa
AA seq
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MTVTTFSELELDDSLLEALQDKGFSRPTAIQAAAIPPALEGRDVMGSAPTGTGKTAAYLL
PVLQHLIDFPRKKSGPPRVLILTPTRELAMQVADQARELAKHTHLDVATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMVDMGFANDVETIAGETRW
RKQTLLFSATLEGEAIQNFAERLLNEPVEIEADPTRRERKKIQQWYYRADDVEHKTKLLI
HLLKQPDVTRCIVFVRKRERLHELVTWLHQAGISSCYLEGEMVQAKRNEAIKRLSEGRAN
VLVATDVAARGIDIEEISHVFNFDLPRTADIYLHRIGRTGRAGRKGIAISLVEAHDNVLL
GKISRYVQEPLKSRTIDELRPSTRPPSEKLKGKPSKKVLAKRKDKKEKEKETDKPRVKLR
HRAVKNIGKRRKPSGSETAEKGE
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccactttttccgaactcgaacttgatgatagcctgctggaagcactgcag
gacaaaggcttttcgcgccctaccgccattcaggctgcggccattccacccgcactggaa
ggtcgtgacgttatgggctcggcgccaaccggtaccggaaaaacggccgcttacctgctg
cccgtgttacagcacctgatcgacttcccgcgtaaaaaatcgggcccgccgcgcgtactc
attttgaccccaacgcgtgaactggcgatgcaggttgccgatcaggcacgcgaactggcc
aaacacacccatcttgatgtcgccaccattaccggcggcgtggcttacatgaaccatgct
gaagtgttcagtgagaatcaggatatcgtggttgccaccaccggccgcctgctgcaatac
attaaagaagagaacttcgactgccgcgccgttgagacactgatccttgatgaagccgat
cgcatggtggatatgggctttgccaacgatgtcgaaaccatcgcgggagaaactcgctgg
cgtaagcaaacgctgctgttctctgccacgctggaaggcgaagcgattcagaattttgca
gaacgcctgctcaacgagccggtggaaattgaagccgatcctacccgccgcgaacgtaag
aaaatccagcagtggtattaccgcgcggatgacgttgagcataaaaccaagctgctgatt
cacctgctcaaacagccagacgtcacgcgctgcatcgtgtttgtgcgcaaacgcgagcgc
ctgcatgaactggttacctggcttcatcaggcgggcatctccagttgttatctggagggc
gaaatggtgcaggcaaaacgtaacgaagcgatcaagcgtctgagcgaaggccgtgccaac
gtattagtagcaaccgatgttgctgcgcgcggtatcgatatcgaagagatcagccacgtc
tttaactttgatctgccacgtaccgctgatatctatctgcaccgtattggccgtaccggt
cgcgcgggccgcaaaggcattgcgatttcactggttgaggcgcatgacaacgtgctgctc
ggcaaaatcagccgttatgtgcaggaaccgttaaaatctcgcacaattgatgaactgcgg
ccttcaacgcgcccgccgagcgaaaagctgaagggcaagccgtcgaagaaagtgctggcc
aagcgcaaagataaaaaagagaaagagaaagagaccgataagccgcgtgtcaaactgcgc
catcgcgccgtgaagaatatcggcaaacgccgcaaacccagcggcagcgaaacggcagaa
aaaggcgaataa
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