Duffyella gerundensis: EM595_2822
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Entry
EM595_2822 CDS
T04258
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ege
Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ege03009
]
EM595_2822 (rlmD)
Enzymes [BR:
ege01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EM595_2822 (rlmD)
Ribosome biogenesis [BR:
ege03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EM595_2822 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
RrnaAD
Methyltransf_25
PCMT
TRM5-TYW2_MTfase
Cons_hypoth95
MTS
DUF900
Methyltransf_23
PDGF
CMAS
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
CUU25053
UniProt:
A0A0U5EC81
LinkDB
All DBs
Position
1:complement(3014165..3015481)
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AA seq
438 aa
AA seq
DB search
MAQFYSAKRRVTTRQRITVTVDDLDPFGQGVARHQGKALFISGALPGEEVEVTLLEEKRQ
YARGKASKLITRSPQRVTPRCPYFSRCGGCQQQHASVALQQESKARALSRQLSQEAGRDI
AIDEIISGSEYGYRRRARLSLNYLPKEKRLQMGFRQAASAELVEITECPVLMPELNALIA
PLSQCLRSLQAARRLGHIELVQADNGPLMILRHLEQLSAADRQKLEQFSHTEQVSLFLAP
DSETLEQVNGEPPVYHSQGLRLSFSPRDFIQVNDAVNQQMVSRALAWLDLQPQDRLLDLF
CGMGNFTLPAGKQAENVVGVEGVAALVRQGAYNASLNNLNNVTFFHENLDDDVTRQPWAA
QGFNKVLLDPARAGAAGVMQHIARLAPQRVVYVSCNPATLARDSQTLLAAGYHLERVAML
DMFPHTGHLESMVLFSKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaagcggcgcgtgacgacccgccaacgcatcaccgtaacg
gtcgacgatctcgatccctttggtcagggcgttgcccgtcatcagggcaaggcgctgttt
atcagcggcgcgttgccgggcgaggaagtggaggtcacgctgctggaggagaagcgccaa
tatgcgcgcggcaaagccagcaagctgatcacccgcagcccgcagcgggtgacgccacgt
tgcccctacttttcacgttgtggcggctgccagcagcagcatgcgtcggttgcgctacag
caggagagcaaggcgcgggcgttatcgcgtcagctcagccaggaagcgggccgcgatatc
gccattgatgaaatcatcagcggcagtgaatatggctatcgtcgtcgcgcgcgcctgagt
ctgaattacctgccgaaagagaagcggttgcagatgggctttcgccaggccgcctcggct
gaactggtggaaatcaccgaatgccctgttttgatgcccgaacttaatgcactgattgcg
ccactcagccagtgcctgcgcagtttacaggcggcgcgccgtctgggacacattgagctg
gtgcaggccgataacggaccgctgatgatcctgcgccatcttgagcagctgagcgccgcc
gaccggcaaaaactggaacagttttcgcatacagagcaggtatcgctgtttttggccccg
gacagcgagacgcttgagcaggtcaacggcgagccgccggtttatcactcgcaaggtttg
cgcctgagtttcagtccgcgtgattttattcaggttaacgatgcggtgaatcagcagatg
gtgagtcgcgcgctggcctggctcgatctgcagccgcaagatcggctgctggatctcttt
tgcgggatgggaaatttcacacttccggcggggaaacaggcagaaaatgttgtcggtgtg
gagggtgttgcagcattagttcgccagggtgcgtataatgcatcactgaataatctcaat
aacgtcaccttctttcatgaaaatttagacgatgacgtgacacgccagccatgggcggcg
caaggctttaataaggtgttactggatccggcgcgtgccggggccgcaggcgtaatgcag
catatcgccaggctggcaccacagcgtgtggtgtacgtgtcgtgcaatccagcgaccctg
gcgcgggacagtcagactttactggctgccggttaccacctggagagggtcgcgatgctc
gatatgtttccacataccggtcatctcgaatccatggtgcttttcagcaaaacctaa
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