Duffyella gerundensis: EM595_3092
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Entry
EM595_3092 CDS
T04258
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ege
Duffyella gerundensis
Pathway
ege03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EM595_3092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ege03019
]
EM595_3092
03016 Transfer RNA biogenesis [BR:
ege03016
]
EM595_3092
Enzymes [BR:
ege01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EM595_3092
Messenger RNA biogenesis [BR:
ege03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EM595_3092
Transfer RNA biogenesis [BR:
ege03016
]
Prokaryotic type
tRNA degradation factors
EM595_3092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
LexA_DNA_bind
TFIIE_beta
UPF0158
Motif
Other DBs
NCBI-ProteinID:
CUU25323
UniProt:
A0A0U5L865
LinkDB
All DBs
Position
1:complement(3326405..3328852)
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AA seq
815 aa
AA seq
DB search
MSNDPFQEREAEKYENPIPSREFILAHLDKREKPASREELAQEMNISGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGFGFLRAEGQKEDFYLSAEQMKMCMH
GDIILAQPMGADRKGRREARVVRVLEPRNNQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
EELMGARMGFVVVVELTQRPTRRTKAIGKVVEVLGDNMGTGMAVDMALRTHEIPHEWPPE
LEQQISTLSEEVPEEAKAGRVDLRQLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHRRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
ASGKLTGFRHYEAVMNSHARLTYNKVWNILQGNQELREQYHALVPHLQELHNMYQVLSTA
RDQRGGISFETEEAKFIFNAERRIERVEQTVRNDAHKLIEECMILANIASARFVEKHEEP
ALFRDHDRPSDDSITSFRTVLNELGLTLSGGNKPQPIDYAALLEAIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALTSYAHFTSPIRRYPDLLLHRAIKYQLAKQEGEVTGITTPT
GGYHYEMNQMLELGQHCSLTERRADEATRDVADWLKCDFMLDQVGNNFTGIISSVTGFGF
FVRLTDLFIDGLVHVSTLDNDYYRFDAVGQRLIGESGGRTYRLGDTVEVRVEAVHMEERK
IDFALVSSTRQPRGAGKTAREKEKKGGGAHSGKRRREQRKGKNFEPDTAFRGDSKKPAAT
KTGIKAEKKVKSPSEKTRKIATATKQKRAAKKQSS
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgatccttttcaggaaagagaagctgaaaaatacgaaaaccctattccaagt
cgcgagttcatacttgcgcatttagacaaacgtgaaaaaccggccagccgcgaagagctg
gcgcaggaaatgaacatcagcggagaagagcagctggaagcgctgcgccgtcgactgcgc
gccatggagcgcgacggtcagctggtgtttacccgacgtcaatgttacgcgctgccagag
cgccttgatttgctacgcggcaaggtgatcggccaccgcgacggcttcggctttctgcgc
gccgaagggcaaaaagaggatttctacctttcagccgaacagatgaagatgtgcatgcat
ggcgatatcatcctcgctcagccaatgggcgctgaccgcaagggccgccgtgaagcacgc
gtggttcgcgtgcttgagccgcgtaacaaccaaatcgtcggtcgctactttaccgaagcg
ggcgtgggctttgtggtaccggacgacagccgtctgagctttgatattctcattccgcca
gaagagctgatgggcgcgcgcatgggctttgtggtggtggttgaactcacccagcgtcca
acgcgccgcacaaaagcgatcggtaaagttgtcgaggtgctgggcgataacatgggcacc
ggcatggccgttgacatggcgctacggacccacgaaattccgcacgaatggccgccggaa
ctggaacagcagatttcaacgctgagcgaagaagtaccggaagaggcgaaagccggacgc
gtcgatctgcgtcagctgccgctggtcaccattgatggcgaagacgcccgcgactttgat
gatgcagtgttctgtgagaaaaaacgcggcggtggctggcgcctgtgggtagccattgct
gacgtcagctactatgtccgtccgggcacaccgcttgatgacgaagcgcatcgtcgtggc
acctccgtctatttcccgtcgcaggttatcccgatgctgccggaagtgctgtctaatggg
ctctgctcgcttaatccgcaggtcgaccgtctctgtatggtgtgcgagatgaccatttcc
gccagcggtaagctgaccggattcaggcattacgaagcggtgatgaactcgcacgcgcgc
ctgacctataacaaagtgtggaatattctgcagggcaaccaggagctgcgcgagcagtat
cacgcgctggtgccgcatctgcaggagctccacaacatgtatcaggtgctaagcaccgca
cgcgatcagcgtggcggcatctcatttgagaccgaagaagcgaaatttatcttcaacgct
gagcgtcgcattgagcgcgttgagcagacggtgcgtaacgatgcgcacaagctgatcgaa
gagtgcatgatcctcgcgaacatcgcctctgcgcgttttgttgagaagcacgaagagcct
gcgctgttccgcgaccacgatcgcccaagtgatgacagtatcaccagcttccgcaccgtg
cttaatgagcttggtctgacgctgtcgggtggcaataagccgcagccgatcgattatgcc
gcgctgctggaagcgatcgccgaccgtcccgatcatgaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggcagtttacgatccggaaaaccgtggccactttggcctggcgctg
acgtcgtacgcgcactttacctcgccgattcgtcgttatcccgatctgctgctgcaccgc
gccattaagtatcagctggcgaagcaggagggcgaagtcaccggcatcaccacgccaacc
ggtggctatcactacgagatgaaccagatgcttgagctgggtcagcactgttcgctgacc
gagcgccgtgccgatgaagcgacgcgcgatgtggcggactggctgaagtgtgacttcatg
ctggatcaggtcggcaataactttaccggcatcatctccagcgtgaccggctttggcttc
tttgtgcgtctgaccgatctgtttatcgatggtctggtacatgtttccacgctggacaat
gactactatcgctttgatgcggttggccagcgtctgatcggcgagtctggtggccgaacc
tatcgccttggcgataccgtggaagtgcgcgtggaagcagtgcacatggaagagcgcaag
atcgattttgcgctggtttccagcacccgccagccgcgcggcgccggtaaaacggcccgc
gagaaagagaaaaaaggcggcggcgcccactccggcaaacgtcgtcgtgagcagcgtaaa
ggcaaaaattttgagcctgataccgctttccgcggcgacagcaagaaaccggctgcgacc
aaaaccgggataaaagctgagaaaaaagtgaaatctccctcagagaaaacccgtaaaatc
gccacggcaacgaaacagaagcgcgcggcgaaaaagcaaagcagctga
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